Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1145

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1143 and Pf6N2E2_1144 are separated by 16 nucleotidesPf6N2E2_1144 and Pf6N2E2_1145 are separated by 13 nucleotidesPf6N2E2_1145 and Pf6N2E2_1146 are separated by 9 nucleotides Pf6N2E2_1143 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases, at 1,339,620 to 1,341,293 _1143 Pf6N2E2_1144 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 1,341,310 to 1,342,071 _1144 Pf6N2E2_1145 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 1,342,085 to 1,343,275 _1145 Pf6N2E2_1146 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 1,343,285 to 1,344,412 _1146 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -1 0 1 2at 1341.230 kb on + strandat 1341.231 kb on - strandat 1341.999 kb on + strandat 1341.999 kb on + strandat 1341.999 kb on + strandat 1342.000 kb on - strandat 1342.000 kb on - strandat 1342.057 kb on - strandat 1342.057 kb on - strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.069 kb on + strandat 1342.070 kb on - strandat 1342.070 kb on - strandat 1342.070 kb on - strandat 1342.073 kb on + strandat 1342.074 kb on - strandat 1342.074 kb on - strandat 1342.074 kb on - strandat 1342.074 kb on - strandat 1342.102 kb on + strandat 1342.102 kb on + strandat 1342.102 kb on + strandat 1342.103 kb on - strandat 1343.270 kb on + strandat 1343.270 kb on + strandat 1343.271 kb on - strandat 1343.271 kb on - strandat 1343.271 kb on - strandat 1343.273 kb on + strandat 1343.281 kb on + strandat 1343.281 kb on + strandat 1343.282 kb on - strandat 1343.282 kb on - strandat 1343.282 kb on - strandat 1343.483 kb on + strand, within Pf6N2E2_1146at 1343.483 kb on + strand, within Pf6N2E2_1146at 1343.720 kb on + strand, within Pf6N2E2_1146at 1343.720 kb on + strand, within Pf6N2E2_1146at 1343.720 kb on + strand, within Pf6N2E2_1146at 1343.720 kb on + strand, within Pf6N2E2_1146at 1343.720 kb on + strand, within Pf6N2E2_1146at 1343.721 kb on - strand, within Pf6N2E2_1146at 1343.721 kb on - strand, within Pf6N2E2_1146at 1343.972 kb on + strand, within Pf6N2E2_1146at 1343.972 kb on + strand, within Pf6N2E2_1146at 1343.973 kb on - strand, within Pf6N2E2_1146at 1344.068 kb on + strand, within Pf6N2E2_1146at 1344.069 kb on - strand, within Pf6N2E2_1146at 1344.179 kb on + strand, within Pf6N2E2_1146

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
1,341,230 + +1.1
1,341,231 - +0.7
1,341,999 + -1.2
1,341,999 + -0.2
1,341,999 + +2.0
1,342,000 - -0.3
1,342,000 - +0.2
1,342,057 - +0.6
1,342,057 - +1.0
1,342,069 + +0.5
1,342,069 + -0.2
1,342,069 + -0.3
1,342,069 + -0.1
1,342,069 + +1.8
1,342,069 + -1.2
1,342,069 + -0.2
1,342,070 - -1.6
1,342,070 - +1.4
1,342,070 - -1.0
1,342,073 + -0.6
1,342,074 - -0.1
1,342,074 - -0.4
1,342,074 - +0.0
1,342,074 - +0.1
1,342,102 + +0.7
1,342,102 + +0.1
1,342,102 + +0.1
1,342,103 - +0.3
1,343,270 + -0.2
1,343,270 + +0.1
1,343,271 - -0.6
1,343,271 - +1.0
1,343,271 - +2.4
1,343,273 + +0.1
1,343,281 + +0.2
1,343,281 + +0.3
1,343,282 - +0.3
1,343,282 - -1.1
1,343,282 - +1.3
1,343,483 + Pf6N2E2_1146 0.18 -0.4
1,343,483 + Pf6N2E2_1146 0.18 +0.1
1,343,720 + Pf6N2E2_1146 0.39 -0.5
1,343,720 + Pf6N2E2_1146 0.39 +1.1
1,343,720 + Pf6N2E2_1146 0.39 -0.4
1,343,720 + Pf6N2E2_1146 0.39 +0.5
1,343,720 + Pf6N2E2_1146 0.39 -0.4
1,343,721 - Pf6N2E2_1146 0.39 -1.6
1,343,721 - Pf6N2E2_1146 0.39 -0.3
1,343,972 + Pf6N2E2_1146 0.61 -0.9
1,343,972 + Pf6N2E2_1146 0.61 -0.6
1,343,973 - Pf6N2E2_1146 0.61 +0.2
1,344,068 + Pf6N2E2_1146 0.69 +0.7
1,344,069 - Pf6N2E2_1146 0.70 +0.3
1,344,179 + Pf6N2E2_1146 0.79 -1.6

Or see this region's nucleotide sequence