Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1101

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1100 and Pf6N2E2_1101 are separated by 54 nucleotidesPf6N2E2_1101 and Pf6N2E2_1102 are separated by 186 nucleotides Pf6N2E2_1100 - L-rhamnose operon transcriptional activator RhaR, at 1,286,629 to 1,287,465 _1100 Pf6N2E2_1101 - Transporter, LysE family, at 1,287,520 to 1,288,122 _1101 Pf6N2E2_1102 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 1,288,309 to 1,289,742 _1102 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -1 0 1 2 3 4at 1286.713 kb on + strand, within Pf6N2E2_1100at 1286.714 kb on - strand, within Pf6N2E2_1100at 1286.737 kb on + strand, within Pf6N2E2_1100at 1286.737 kb on + strand, within Pf6N2E2_1100at 1286.737 kb on + strand, within Pf6N2E2_1100at 1286.738 kb on - strand, within Pf6N2E2_1100at 1286.738 kb on - strand, within Pf6N2E2_1100at 1286.738 kb on - strand, within Pf6N2E2_1100at 1286.802 kb on + strand, within Pf6N2E2_1100at 1286.802 kb on + strand, within Pf6N2E2_1100at 1286.878 kb on + strand, within Pf6N2E2_1100at 1286.878 kb on + strand, within Pf6N2E2_1100at 1286.890 kb on + strand, within Pf6N2E2_1100at 1287.073 kb on - strand, within Pf6N2E2_1100at 1287.286 kb on + strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.287 kb on - strand, within Pf6N2E2_1100at 1287.434 kb on - strandat 1287.531 kb on - strandat 1287.603 kb on + strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.604 kb on - strand, within Pf6N2E2_1101at 1287.752 kb on + strand, within Pf6N2E2_1101at 1288.009 kb on + strand, within Pf6N2E2_1101at 1288.010 kb on - strand, within Pf6N2E2_1101at 1288.010 kb on - strand, within Pf6N2E2_1101at 1288.010 kb on - strand, within Pf6N2E2_1101at 1288.300 kb on + strandat 1288.322 kb on + strandat 1288.336 kb on - strandat 1288.344 kb on - strandat 1288.349 kb on + strandat 1288.349 kb on + strandat 1288.349 kb on + strandat 1288.349 kb on + strandat 1288.350 kb on - strandat 1288.350 kb on - strandat 1288.393 kb on + strandat 1288.442 kb on + strandat 1288.442 kb on + strandat 1288.442 kb on + strandat 1288.443 kb on - strandat 1288.443 kb on - strandat 1288.443 kb on - strandat 1288.524 kb on - strand, within Pf6N2E2_1102at 1288.629 kb on + strand, within Pf6N2E2_1102at 1288.877 kb on + strand, within Pf6N2E2_1102at 1288.877 kb on + strand, within Pf6N2E2_1102at 1288.877 kb on + strand, within Pf6N2E2_1102

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
1,286,713 + Pf6N2E2_1100 0.10 +3.3
1,286,714 - Pf6N2E2_1100 0.10 +2.4
1,286,737 + Pf6N2E2_1100 0.13 +2.6
1,286,737 + Pf6N2E2_1100 0.13 +2.5
1,286,737 + Pf6N2E2_1100 0.13 +2.4
1,286,738 - Pf6N2E2_1100 0.13 +0.9
1,286,738 - Pf6N2E2_1100 0.13 +3.2
1,286,738 - Pf6N2E2_1100 0.13 +3.2
1,286,802 + Pf6N2E2_1100 0.21 +2.5
1,286,802 + Pf6N2E2_1100 0.21 +3.2
1,286,878 + Pf6N2E2_1100 0.30 +2.3
1,286,878 + Pf6N2E2_1100 0.30 +2.7
1,286,890 + Pf6N2E2_1100 0.31 +3.0
1,287,073 - Pf6N2E2_1100 0.53 +2.4
1,287,286 + Pf6N2E2_1100 0.78 +3.3
1,287,287 - Pf6N2E2_1100 0.79 +2.8
1,287,287 - Pf6N2E2_1100 0.79 +2.7
1,287,287 - Pf6N2E2_1100 0.79 +2.6
1,287,287 - Pf6N2E2_1100 0.79 +1.4
1,287,287 - Pf6N2E2_1100 0.79 +2.1
1,287,287 - Pf6N2E2_1100 0.79 +2.4
1,287,434 - +0.8
1,287,531 - +3.1
1,287,603 + Pf6N2E2_1101 0.14 +3.4
1,287,604 - Pf6N2E2_1101 0.14 +2.7
1,287,604 - Pf6N2E2_1101 0.14 +3.8
1,287,604 - Pf6N2E2_1101 0.14 +3.3
1,287,604 - Pf6N2E2_1101 0.14 +2.9
1,287,604 - Pf6N2E2_1101 0.14 +2.9
1,287,604 - Pf6N2E2_1101 0.14 +1.8
1,287,752 + Pf6N2E2_1101 0.38 +1.8
1,288,009 + Pf6N2E2_1101 0.81 +3.8
1,288,010 - Pf6N2E2_1101 0.81 +2.8
1,288,010 - Pf6N2E2_1101 0.81 +2.4
1,288,010 - Pf6N2E2_1101 0.81 +1.7
1,288,300 + -0.7
1,288,322 + +0.1
1,288,336 - +0.8
1,288,344 - -0.9
1,288,349 + +2.8
1,288,349 + +0.6
1,288,349 + -0.3
1,288,349 + +1.8
1,288,350 - +0.5
1,288,350 - +0.3
1,288,393 + +0.4
1,288,442 + -1.4
1,288,442 + +0.4
1,288,442 + +1.0
1,288,443 - -0.4
1,288,443 - -1.0
1,288,443 - +0.3
1,288,524 - Pf6N2E2_1102 0.15 +1.6
1,288,629 + Pf6N2E2_1102 0.22 -0.3
1,288,877 + Pf6N2E2_1102 0.40 -1.7
1,288,877 + Pf6N2E2_1102 0.40 +0.8
1,288,877 + Pf6N2E2_1102 0.40 +0.4

Or see this region's nucleotide sequence