Strain Fitness in Marinobacter adhaerens HP15 around HP15_3771

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3770 and HP15_3771 are separated by 248 nucleotidesHP15_3771 and HP15_3772 are separated by 36 nucleotides HP15_3770: HP15_3770 - MATE efflux family protein, at 3,991,408 to 3,992,736 _3770 HP15_3771: HP15_3771 - membrane protein containing cytochrome c oxidase, subunit II domain, at 3,992,985 to 3,994,064 _3771 HP15_3772: HP15_3772 - cytochrome c oxidase, subunit I, at 3,994,101 to 3,995,705 _3772 Position (kb) 3992 3993 3994 3995Strain fitness (log2 ratio) -2 -1 0 1 2at 3991.985 kb on + strand, within HP15_3770at 3991.995 kb on + strand, within HP15_3770at 3992.069 kb on + strand, within HP15_3770at 3992.081 kb on + strand, within HP15_3770at 3992.166 kb on + strand, within HP15_3770at 3992.174 kb on - strand, within HP15_3770at 3992.401 kb on + strand, within HP15_3770at 3992.404 kb on - strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.552 kb on + strand, within HP15_3770at 3992.582 kb on - strand, within HP15_3770at 3992.621 kb on + strandat 3992.661 kb on + strandat 3992.661 kb on + strandat 3992.661 kb on + strandat 3992.687 kb on - strandat 3992.689 kb on + strandat 3992.697 kb on - strandat 3992.697 kb on - strandat 3992.697 kb on - strandat 3992.704 kb on - strandat 3992.823 kb on + strandat 3992.842 kb on - strandat 3992.852 kb on - strandat 3992.866 kb on + strandat 3992.887 kb on - strandat 3992.923 kb on - strandat 3992.979 kb on + strandat 3992.988 kb on - strandat 3993.002 kb on - strandat 3993.028 kb on + strandat 3993.028 kb on + strandat 3993.036 kb on - strandat 3993.036 kb on - strandat 3993.120 kb on + strand, within HP15_3771at 3993.304 kb on - strand, within HP15_3771at 3993.418 kb on - strand, within HP15_3771at 3993.499 kb on + strand, within HP15_3771at 3993.507 kb on - strand, within HP15_3771at 3993.512 kb on - strand, within HP15_3771at 3993.570 kb on + strand, within HP15_3771at 3993.570 kb on + strand, within HP15_3771at 3993.633 kb on + strand, within HP15_3771at 3993.641 kb on - strand, within HP15_3771at 3993.685 kb on + strand, within HP15_3771at 3993.686 kb on + strand, within HP15_3771at 3993.709 kb on - strand, within HP15_3771at 3993.785 kb on + strand, within HP15_3771at 3994.183 kb on - strandat 3994.213 kb on - strandat 3994.295 kb on + strand, within HP15_3772at 3994.303 kb on - strand, within HP15_3772at 3994.356 kb on + strand, within HP15_3772at 3994.484 kb on + strand, within HP15_3772at 3994.484 kb on + strand, within HP15_3772at 3994.492 kb on - strand, within HP15_3772at 3994.517 kb on + strand, within HP15_3772at 3994.563 kb on + strand, within HP15_3772at 3994.563 kb on + strand, within HP15_3772at 3994.568 kb on + strand, within HP15_3772at 3994.576 kb on + strand, within HP15_3772at 3994.589 kb on + strand, within HP15_3772at 3994.599 kb on + strand, within HP15_3772at 3994.607 kb on - strand, within HP15_3772at 3994.669 kb on + strand, within HP15_3772at 3994.719 kb on + strand, within HP15_3772at 3994.774 kb on - strand, within HP15_3772at 3994.856 kb on + strand, within HP15_3772at 3994.864 kb on - strand, within HP15_3772at 3994.868 kb on + strand, within HP15_3772at 3994.876 kb on - strand, within HP15_3772at 3994.890 kb on + strand, within HP15_3772at 3994.892 kb on + strand, within HP15_3772at 3994.892 kb on + strand, within HP15_3772at 3994.900 kb on + strand, within HP15_3772at 3994.908 kb on - strand, within HP15_3772at 3995.022 kb on - strand, within HP15_3772at 3995.034 kb on - strand, within HP15_3772

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,991,985 + HP15_3770 0.43 +0.8
3,991,995 + HP15_3770 0.44 +0.8
3,992,069 + HP15_3770 0.50 +0.3
3,992,081 + HP15_3770 0.51 -0.2
3,992,166 + HP15_3770 0.57 +0.0
3,992,174 - HP15_3770 0.58 +1.1
3,992,401 + HP15_3770 0.75 -0.1
3,992,404 - HP15_3770 0.75 +0.6
3,992,501 + HP15_3770 0.82 -1.8
3,992,501 + HP15_3770 0.82 -0.3
3,992,501 + HP15_3770 0.82 -0.6
3,992,501 + HP15_3770 0.82 -0.0
3,992,501 + HP15_3770 0.82 -0.8
3,992,501 + HP15_3770 0.82 +0.2
3,992,501 + HP15_3770 0.82 -0.1
3,992,509 - HP15_3770 0.83 -0.2
3,992,509 - HP15_3770 0.83 +0.1
3,992,509 - HP15_3770 0.83 -0.3
3,992,509 - HP15_3770 0.83 +0.9
3,992,509 - HP15_3770 0.83 -0.5
3,992,509 - HP15_3770 0.83 +0.2
3,992,509 - HP15_3770 0.83 +0.0
3,992,552 + HP15_3770 0.86 +0.6
3,992,582 - HP15_3770 0.88 +1.5
3,992,621 + -0.1
3,992,661 + +0.4
3,992,661 + -0.1
3,992,661 + -0.2
3,992,687 - -0.4
3,992,689 + -0.1
3,992,697 - +0.1
3,992,697 - -0.2
3,992,697 - -1.3
3,992,704 - -0.4
3,992,823 + -0.1
3,992,842 - +0.3
3,992,852 - -0.1
3,992,866 + +0.5
3,992,887 - +0.5
3,992,923 - +0.5
3,992,979 + +0.1
3,992,988 - +0.6
3,993,002 - +0.7
3,993,028 + +0.4
3,993,028 + -0.5
3,993,036 - +0.1
3,993,036 - -0.7
3,993,120 + HP15_3771 0.12 +0.5
3,993,304 - HP15_3771 0.30 -0.3
3,993,418 - HP15_3771 0.40 -0.8
3,993,499 + HP15_3771 0.48 +0.1
3,993,507 - HP15_3771 0.48 -0.7
3,993,512 - HP15_3771 0.49 -1.1
3,993,570 + HP15_3771 0.54 -0.1
3,993,570 + HP15_3771 0.54 -0.8
3,993,633 + HP15_3771 0.60 +0.1
3,993,641 - HP15_3771 0.61 +0.6
3,993,685 + HP15_3771 0.65 +0.1
3,993,686 + HP15_3771 0.65 -0.0
3,993,709 - HP15_3771 0.67 -1.0
3,993,785 + HP15_3771 0.74 -0.3
3,994,183 - -0.6
3,994,213 - -0.0
3,994,295 + HP15_3772 0.12 -0.6
3,994,303 - HP15_3772 0.13 +0.8
3,994,356 + HP15_3772 0.16 +0.5
3,994,484 + HP15_3772 0.24 +0.1
3,994,484 + HP15_3772 0.24 -0.4
3,994,492 - HP15_3772 0.24 -0.2
3,994,517 + HP15_3772 0.26 -1.1
3,994,563 + HP15_3772 0.29 +1.1
3,994,563 + HP15_3772 0.29 -0.3
3,994,568 + HP15_3772 0.29 +0.6
3,994,576 + HP15_3772 0.30 +0.4
3,994,589 + HP15_3772 0.30 +0.5
3,994,599 + HP15_3772 0.31 +0.3
3,994,607 - HP15_3772 0.32 +1.1
3,994,669 + HP15_3772 0.35 +0.5
3,994,719 + HP15_3772 0.39 +1.8
3,994,774 - HP15_3772 0.42 +0.7
3,994,856 + HP15_3772 0.47 -0.0
3,994,864 - HP15_3772 0.48 +0.3
3,994,868 + HP15_3772 0.48 -0.2
3,994,876 - HP15_3772 0.48 -0.2
3,994,890 + HP15_3772 0.49 -0.1
3,994,892 + HP15_3772 0.49 +0.1
3,994,892 + HP15_3772 0.49 +0.9
3,994,900 + HP15_3772 0.50 -0.0
3,994,908 - HP15_3772 0.50 -0.1
3,995,022 - HP15_3772 0.57 +0.6
3,995,034 - HP15_3772 0.58 -0.1

Or see this region's nucleotide sequence