Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3528 and HP15_3529 are separated by 49 nucleotides HP15_3529 and HP15_3530 are separated by 24 nucleotides HP15_3530 and HP15_3531 are separated by 23 nucleotides
HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617
_3528
HP15_3529: HP15_3529 - GTP cyclohydrolase 1, at 3,716,667 to 3,717,236
_3529
HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635
_3530
HP15_3531: HP15_3531 - hypothetical protein, at 3,717,659 to 3,718,096
_3531
Position (kb)
3716
3717
3718 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3715.743 kb on + strand, within HP15_3528 at 3715.751 kb on - strand, within HP15_3528 at 3715.781 kb on + strand, within HP15_3528 at 3715.839 kb on + strand, within HP15_3528 at 3715.931 kb on + strand, within HP15_3528 at 3715.939 kb on - strand, within HP15_3528 at 3716.122 kb on + strand, within HP15_3528 at 3716.140 kb on - strand, within HP15_3528 at 3716.146 kb on + strand, within HP15_3528 at 3716.159 kb on - strand, within HP15_3528 at 3716.162 kb on + strand, within HP15_3528 at 3716.217 kb on - strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.410 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.459 kb on + strand, within HP15_3528 at 3716.484 kb on - strand, within HP15_3528 at 3716.528 kb on + strand at 3716.534 kb on + strand at 3716.599 kb on + strand at 3716.638 kb on + strand at 3716.748 kb on + strand, within HP15_3529 at 3716.778 kb on + strand, within HP15_3529 at 3716.784 kb on - strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.980 kb on - strand, within HP15_3529 at 3717.051 kb on + strand, within HP15_3529 at 3717.099 kb on + strand, within HP15_3529 at 3717.240 kb on + strand at 3717.384 kb on - strand, within HP15_3530 at 3717.386 kb on + strand, within HP15_3530 at 3717.405 kb on + strand, within HP15_3530 at 3717.406 kb on + strand, within HP15_3530 at 3717.432 kb on + strand, within HP15_3530 at 3717.487 kb on + strand, within HP15_3530 at 3717.503 kb on - strand, within HP15_3530 at 3717.505 kb on - strand, within HP15_3530 at 3717.512 kb on - strand, within HP15_3530 at 3717.518 kb on - strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.563 kb on + strand, within HP15_3530 at 3717.663 kb on - strand at 3717.866 kb on - strand, within HP15_3531 at 3718.011 kb on + strand, within HP15_3531 at 3718.098 kb on - strand at 3718.100 kb on - strand at 3718.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,715,743 + HP15_3528 0.18 -0.0 3,715,751 - HP15_3528 0.19 -0.1 3,715,781 + HP15_3528 0.22 -0.1 3,715,839 + HP15_3528 0.27 -0.0 3,715,931 + HP15_3528 0.36 -0.1 3,715,939 - HP15_3528 0.36 +0.3 3,716,122 + HP15_3528 0.54 -0.7 3,716,140 - HP15_3528 0.55 +0.0 3,716,146 + HP15_3528 0.56 +0.4 3,716,159 - HP15_3528 0.57 +0.7 3,716,162 + HP15_3528 0.57 -0.2 3,716,217 - HP15_3528 0.62 +0.9 3,716,404 + HP15_3528 0.80 -0.6 3,716,404 + HP15_3528 0.80 -0.2 3,716,404 + HP15_3528 0.80 +0.3 3,716,410 - HP15_3528 0.81 +0.2 3,716,412 - HP15_3528 0.81 -0.7 3,716,412 - HP15_3528 0.81 +0.0 3,716,412 - HP15_3528 0.81 +0.3 3,716,412 - HP15_3528 0.81 +0.3 3,716,459 + HP15_3528 0.85 +1.5 3,716,484 - HP15_3528 0.87 +0.1 3,716,528 + +0.6 3,716,534 + +0.7 3,716,599 + -0.2 3,716,638 + -0.6 3,716,748 + HP15_3529 0.14 -0.7 3,716,778 + HP15_3529 0.19 -1.6 3,716,784 - HP15_3529 0.21 -1.3 3,716,961 + HP15_3529 0.52 -0.8 3,716,961 + HP15_3529 0.52 -1.6 3,716,969 - HP15_3529 0.53 -2.1 3,716,969 - HP15_3529 0.53 -0.7 3,716,980 - HP15_3529 0.55 -1.4 3,717,051 + HP15_3529 0.67 -1.9 3,717,099 + HP15_3529 0.76 -1.8 3,717,240 + -0.7 3,717,384 - HP15_3530 0.33 -0.1 3,717,386 + HP15_3530 0.33 -0.0 3,717,405 + HP15_3530 0.38 -0.2 3,717,406 + HP15_3530 0.39 +0.2 3,717,432 + HP15_3530 0.46 -0.7 3,717,487 + HP15_3530 0.60 +0.4 3,717,503 - HP15_3530 0.65 -1.2 3,717,505 - HP15_3530 0.65 +0.1 3,717,512 - HP15_3530 0.67 +0.0 3,717,518 - HP15_3530 0.69 -1.1 3,717,519 + HP15_3530 0.69 +0.6 3,717,519 + HP15_3530 0.69 -0.2 3,717,519 + HP15_3530 0.69 -0.9 3,717,519 + HP15_3530 0.69 +2.1 3,717,519 + HP15_3530 0.69 +0.5 3,717,527 - HP15_3530 0.71 +0.3 3,717,527 - HP15_3530 0.71 -1.1 3,717,527 - HP15_3530 0.71 -0.1 3,717,527 - HP15_3530 0.71 +0.3 3,717,563 + HP15_3530 0.81 +0.2 3,717,663 - -0.5 3,717,866 - HP15_3531 0.47 +0.4 3,718,011 + HP15_3531 0.80 -0.3 3,718,098 - +0.4 3,718,100 - -0.4 3,718,105 - +0.2
Or see this region's nucleotide sequence