Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2870 and HP15_2871 are separated by 46 nucleotides HP15_2871 and HP15_2872 overlap by 29 nucleotides HP15_2872 and HP15_2873 are separated by 48 nucleotides
HP15_2870: HP15_2870 - urease accessory protein ureG-like protein, at 3,007,859 to 3,008,473
_2870
HP15_2871: HP15_2871 - urease accessory protein ureF-like protein, at 3,008,520 to 3,009,233
_2871
HP15_2872: HP15_2872 - nickel metallochaperone UreE, at 3,009,205 to 3,009,747
_2872
HP15_2873: HP15_2873 - urease subunit alpha-like protein, at 3,009,796 to 3,011,499
_2873
Position (kb)
3009
3010 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3008.418 kb on + strand at 3008.426 kb on - strand at 3008.426 kb on - strand at 3008.473 kb on + strand at 3008.478 kb on + strand at 3008.497 kb on + strand at 3008.500 kb on - strand at 3008.534 kb on + strand at 3008.542 kb on - strand at 3008.548 kb on + strand at 3008.548 kb on + strand at 3008.548 kb on + strand at 3008.548 kb on + strand at 3008.548 kb on + strand at 3008.558 kb on + strand at 3008.566 kb on - strand at 3008.679 kb on + strand, within HP15_2871 at 3008.700 kb on - strand, within HP15_2871 at 3008.733 kb on + strand, within HP15_2871 at 3008.763 kb on + strand, within HP15_2871 at 3008.849 kb on + strand, within HP15_2871 at 3008.849 kb on + strand, within HP15_2871 at 3008.857 kb on - strand, within HP15_2871 at 3008.857 kb on - strand, within HP15_2871 at 3008.957 kb on + strand, within HP15_2871 at 3008.971 kb on + strand, within HP15_2871 at 3009.087 kb on - strand, within HP15_2871 at 3009.087 kb on - strand, within HP15_2871 at 3009.118 kb on - strand, within HP15_2871 at 3009.143 kb on - strand, within HP15_2871 at 3009.148 kb on - strand, within HP15_2871 at 3009.153 kb on - strand, within HP15_2871 at 3009.216 kb on + strand at 3009.216 kb on + strand at 3009.224 kb on - strand at 3009.234 kb on + strand at 3009.264 kb on + strand, within HP15_2872 at 3009.318 kb on + strand, within HP15_2872 at 3009.342 kb on - strand, within HP15_2872 at 3009.404 kb on + strand, within HP15_2872 at 3009.407 kb on - strand, within HP15_2872 at 3009.412 kb on - strand, within HP15_2872 at 3009.430 kb on + strand, within HP15_2872 at 3009.456 kb on + strand, within HP15_2872 at 3009.456 kb on + strand, within HP15_2872 at 3009.491 kb on - strand, within HP15_2872 at 3009.556 kb on - strand, within HP15_2872 at 3009.582 kb on - strand, within HP15_2872 at 3009.640 kb on - strand, within HP15_2872 at 3009.669 kb on - strand, within HP15_2872 at 3009.677 kb on - strand, within HP15_2872 at 3009.679 kb on + strand, within HP15_2872 at 3009.679 kb on + strand, within HP15_2872 at 3009.694 kb on + strand at 3009.769 kb on + strand at 3009.769 kb on + strand at 3009.779 kb on + strand at 3009.779 kb on + strand at 3009.787 kb on - strand at 3009.794 kb on + strand at 3009.826 kb on - strand at 3009.848 kb on - strand at 3009.855 kb on - strand at 3009.855 kb on - strand at 3009.873 kb on + strand at 3009.914 kb on - strand at 3009.929 kb on - strand at 3009.950 kb on - strand at 3009.984 kb on - strand, within HP15_2873 at 3010.030 kb on + strand, within HP15_2873 at 3010.038 kb on - strand, within HP15_2873 at 3010.131 kb on - strand, within HP15_2873 at 3010.269 kb on + strand, within HP15_2873 at 3010.277 kb on - strand, within HP15_2873 at 3010.331 kb on - strand, within HP15_2873 at 3010.332 kb on - strand, within HP15_2873 at 3010.343 kb on + strand, within HP15_2873 at 3010.392 kb on + strand, within HP15_2873 at 3010.408 kb on + strand, within HP15_2873 at 3010.449 kb on - strand, within HP15_2873 at 3010.491 kb on + strand, within HP15_2873 at 3010.533 kb on + strand, within HP15_2873 at 3010.536 kb on - strand, within HP15_2873 at 3010.559 kb on + strand, within HP15_2873 at 3010.579 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.592 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.599 kb on + strand, within HP15_2873 at 3010.633 kb on - strand, within HP15_2873
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,008,418 + -0.1 3,008,426 - +1.7 3,008,426 - +0.1 3,008,473 + -0.8 3,008,478 + +0.6 3,008,497 + -0.7 3,008,500 - -0.5 3,008,534 + -1.2 3,008,542 - -0.1 3,008,548 + -0.0 3,008,548 + +0.2 3,008,548 + -0.0 3,008,548 + -1.8 3,008,548 + -0.5 3,008,558 + -0.1 3,008,566 - -0.3 3,008,679 + HP15_2871 0.22 +0.8 3,008,700 - HP15_2871 0.25 -0.3 3,008,733 + HP15_2871 0.30 -0.1 3,008,763 + HP15_2871 0.34 -0.4 3,008,849 + HP15_2871 0.46 +1.4 3,008,849 + HP15_2871 0.46 +0.2 3,008,857 - HP15_2871 0.47 -0.6 3,008,857 - HP15_2871 0.47 -0.1 3,008,957 + HP15_2871 0.61 -0.4 3,008,971 + HP15_2871 0.63 +1.0 3,009,087 - HP15_2871 0.79 +0.4 3,009,087 - HP15_2871 0.79 +0.8 3,009,118 - HP15_2871 0.84 +0.4 3,009,143 - HP15_2871 0.87 -1.1 3,009,148 - HP15_2871 0.88 +0.0 3,009,153 - HP15_2871 0.89 +0.8 3,009,216 + +0.2 3,009,216 + +0.3 3,009,224 - +0.1 3,009,234 + +0.3 3,009,264 + HP15_2872 0.11 +0.4 3,009,318 + HP15_2872 0.21 +0.6 3,009,342 - HP15_2872 0.25 +0.3 3,009,404 + HP15_2872 0.37 +0.3 3,009,407 - HP15_2872 0.37 -0.2 3,009,412 - HP15_2872 0.38 +0.0 3,009,430 + HP15_2872 0.41 +0.9 3,009,456 + HP15_2872 0.46 -0.2 3,009,456 + HP15_2872 0.46 +0.8 3,009,491 - HP15_2872 0.53 -1.1 3,009,556 - HP15_2872 0.65 -0.6 3,009,582 - HP15_2872 0.69 +1.5 3,009,640 - HP15_2872 0.80 +0.4 3,009,669 - HP15_2872 0.85 +0.1 3,009,677 - HP15_2872 0.87 +0.1 3,009,679 + HP15_2872 0.87 -0.1 3,009,679 + HP15_2872 0.87 +1.0 3,009,694 + +0.0 3,009,769 + -0.1 3,009,769 + -0.8 3,009,779 + -0.1 3,009,779 + +0.4 3,009,787 - -0.1 3,009,794 + +0.7 3,009,826 - +0.1 3,009,848 - +0.7 3,009,855 - +0.5 3,009,855 - +0.2 3,009,873 + -0.2 3,009,914 - +0.3 3,009,929 - -0.5 3,009,950 - +0.8 3,009,984 - HP15_2873 0.11 -0.4 3,010,030 + HP15_2873 0.14 +0.8 3,010,038 - HP15_2873 0.14 -0.2 3,010,131 - HP15_2873 0.20 -0.6 3,010,269 + HP15_2873 0.28 -0.4 3,010,277 - HP15_2873 0.28 -1.5 3,010,331 - HP15_2873 0.31 +0.4 3,010,332 - HP15_2873 0.31 -1.1 3,010,343 + HP15_2873 0.32 +0.2 3,010,392 + HP15_2873 0.35 -0.1 3,010,408 + HP15_2873 0.36 -0.3 3,010,449 - HP15_2873 0.38 +0.2 3,010,491 + HP15_2873 0.41 -1.2 3,010,533 + HP15_2873 0.43 -0.1 3,010,536 - HP15_2873 0.43 -0.1 3,010,559 + HP15_2873 0.45 -0.5 3,010,579 + HP15_2873 0.46 +1.8 3,010,589 + HP15_2873 0.47 -0.4 3,010,589 + HP15_2873 0.47 +0.1 3,010,589 + HP15_2873 0.47 -0.8 3,010,589 + HP15_2873 0.47 +0.1 3,010,589 + HP15_2873 0.47 -0.0 3,010,589 + HP15_2873 0.47 -0.5 3,010,589 + HP15_2873 0.47 +0.2 3,010,589 + HP15_2873 0.47 +1.0 3,010,589 + HP15_2873 0.47 +0.4 3,010,589 + HP15_2873 0.47 +0.1 3,010,592 - HP15_2873 0.47 -1.4 3,010,597 - HP15_2873 0.47 +0.6 3,010,597 - HP15_2873 0.47 +0.3 3,010,597 - HP15_2873 0.47 +1.0 3,010,597 - HP15_2873 0.47 -1.5 3,010,597 - HP15_2873 0.47 +0.5 3,010,599 + HP15_2873 0.47 -0.5 3,010,633 - HP15_2873 0.49 -0.8
Or see this region's nucleotide sequence