Strain Fitness in Marinobacter adhaerens HP15 around HP15_2872

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2870 and HP15_2871 are separated by 46 nucleotidesHP15_2871 and HP15_2872 overlap by 29 nucleotidesHP15_2872 and HP15_2873 are separated by 48 nucleotides HP15_2870: HP15_2870 - urease accessory protein ureG-like protein, at 3,007,859 to 3,008,473 _2870 HP15_2871: HP15_2871 - urease accessory protein ureF-like protein, at 3,008,520 to 3,009,233 _2871 HP15_2872: HP15_2872 - nickel metallochaperone UreE, at 3,009,205 to 3,009,747 _2872 HP15_2873: HP15_2873 - urease subunit alpha-like protein, at 3,009,796 to 3,011,499 _2873 Position (kb) 3009 3010Strain fitness (log2 ratio) -2 -1 0 1 2at 3008.418 kb on + strandat 3008.426 kb on - strandat 3008.426 kb on - strandat 3008.473 kb on + strandat 3008.478 kb on + strandat 3008.497 kb on + strandat 3008.500 kb on - strandat 3008.534 kb on + strandat 3008.542 kb on - strandat 3008.548 kb on + strandat 3008.548 kb on + strandat 3008.548 kb on + strandat 3008.548 kb on + strandat 3008.548 kb on + strandat 3008.558 kb on + strandat 3008.566 kb on - strandat 3008.679 kb on + strand, within HP15_2871at 3008.700 kb on - strand, within HP15_2871at 3008.733 kb on + strand, within HP15_2871at 3008.763 kb on + strand, within HP15_2871at 3008.849 kb on + strand, within HP15_2871at 3008.849 kb on + strand, within HP15_2871at 3008.857 kb on - strand, within HP15_2871at 3008.857 kb on - strand, within HP15_2871at 3008.957 kb on + strand, within HP15_2871at 3008.971 kb on + strand, within HP15_2871at 3009.087 kb on - strand, within HP15_2871at 3009.087 kb on - strand, within HP15_2871at 3009.118 kb on - strand, within HP15_2871at 3009.143 kb on - strand, within HP15_2871at 3009.148 kb on - strand, within HP15_2871at 3009.153 kb on - strand, within HP15_2871at 3009.216 kb on + strandat 3009.216 kb on + strandat 3009.224 kb on - strandat 3009.234 kb on + strandat 3009.264 kb on + strand, within HP15_2872at 3009.318 kb on + strand, within HP15_2872at 3009.342 kb on - strand, within HP15_2872at 3009.404 kb on + strand, within HP15_2872at 3009.407 kb on - strand, within HP15_2872at 3009.412 kb on - strand, within HP15_2872at 3009.430 kb on + strand, within HP15_2872at 3009.456 kb on + strand, within HP15_2872at 3009.456 kb on + strand, within HP15_2872at 3009.491 kb on - strand, within HP15_2872at 3009.556 kb on - strand, within HP15_2872at 3009.582 kb on - strand, within HP15_2872at 3009.640 kb on - strand, within HP15_2872at 3009.669 kb on - strand, within HP15_2872at 3009.677 kb on - strand, within HP15_2872at 3009.679 kb on + strand, within HP15_2872at 3009.679 kb on + strand, within HP15_2872at 3009.694 kb on + strandat 3009.769 kb on + strandat 3009.769 kb on + strandat 3009.779 kb on + strandat 3009.779 kb on + strandat 3009.787 kb on - strandat 3009.794 kb on + strandat 3009.826 kb on - strandat 3009.848 kb on - strandat 3009.855 kb on - strandat 3009.855 kb on - strandat 3009.873 kb on + strandat 3009.914 kb on - strandat 3009.929 kb on - strandat 3009.950 kb on - strandat 3009.984 kb on - strand, within HP15_2873at 3010.030 kb on + strand, within HP15_2873at 3010.038 kb on - strand, within HP15_2873at 3010.131 kb on - strand, within HP15_2873at 3010.269 kb on + strand, within HP15_2873at 3010.277 kb on - strand, within HP15_2873at 3010.331 kb on - strand, within HP15_2873at 3010.332 kb on - strand, within HP15_2873at 3010.343 kb on + strand, within HP15_2873at 3010.392 kb on + strand, within HP15_2873at 3010.408 kb on + strand, within HP15_2873at 3010.449 kb on - strand, within HP15_2873at 3010.491 kb on + strand, within HP15_2873at 3010.533 kb on + strand, within HP15_2873at 3010.536 kb on - strand, within HP15_2873at 3010.559 kb on + strand, within HP15_2873at 3010.579 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.592 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.599 kb on + strand, within HP15_2873at 3010.633 kb on - strand, within HP15_2873

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,008,418 + -0.1
3,008,426 - +1.7
3,008,426 - +0.1
3,008,473 + -0.8
3,008,478 + +0.6
3,008,497 + -0.7
3,008,500 - -0.5
3,008,534 + -1.2
3,008,542 - -0.1
3,008,548 + -0.0
3,008,548 + +0.2
3,008,548 + -0.0
3,008,548 + -1.8
3,008,548 + -0.5
3,008,558 + -0.1
3,008,566 - -0.3
3,008,679 + HP15_2871 0.22 +0.8
3,008,700 - HP15_2871 0.25 -0.3
3,008,733 + HP15_2871 0.30 -0.1
3,008,763 + HP15_2871 0.34 -0.4
3,008,849 + HP15_2871 0.46 +1.4
3,008,849 + HP15_2871 0.46 +0.2
3,008,857 - HP15_2871 0.47 -0.6
3,008,857 - HP15_2871 0.47 -0.1
3,008,957 + HP15_2871 0.61 -0.4
3,008,971 + HP15_2871 0.63 +1.0
3,009,087 - HP15_2871 0.79 +0.4
3,009,087 - HP15_2871 0.79 +0.8
3,009,118 - HP15_2871 0.84 +0.4
3,009,143 - HP15_2871 0.87 -1.1
3,009,148 - HP15_2871 0.88 +0.0
3,009,153 - HP15_2871 0.89 +0.8
3,009,216 + +0.2
3,009,216 + +0.3
3,009,224 - +0.1
3,009,234 + +0.3
3,009,264 + HP15_2872 0.11 +0.4
3,009,318 + HP15_2872 0.21 +0.6
3,009,342 - HP15_2872 0.25 +0.3
3,009,404 + HP15_2872 0.37 +0.3
3,009,407 - HP15_2872 0.37 -0.2
3,009,412 - HP15_2872 0.38 +0.0
3,009,430 + HP15_2872 0.41 +0.9
3,009,456 + HP15_2872 0.46 -0.2
3,009,456 + HP15_2872 0.46 +0.8
3,009,491 - HP15_2872 0.53 -1.1
3,009,556 - HP15_2872 0.65 -0.6
3,009,582 - HP15_2872 0.69 +1.5
3,009,640 - HP15_2872 0.80 +0.4
3,009,669 - HP15_2872 0.85 +0.1
3,009,677 - HP15_2872 0.87 +0.1
3,009,679 + HP15_2872 0.87 -0.1
3,009,679 + HP15_2872 0.87 +1.0
3,009,694 + +0.0
3,009,769 + -0.1
3,009,769 + -0.8
3,009,779 + -0.1
3,009,779 + +0.4
3,009,787 - -0.1
3,009,794 + +0.7
3,009,826 - +0.1
3,009,848 - +0.7
3,009,855 - +0.5
3,009,855 - +0.2
3,009,873 + -0.2
3,009,914 - +0.3
3,009,929 - -0.5
3,009,950 - +0.8
3,009,984 - HP15_2873 0.11 -0.4
3,010,030 + HP15_2873 0.14 +0.8
3,010,038 - HP15_2873 0.14 -0.2
3,010,131 - HP15_2873 0.20 -0.6
3,010,269 + HP15_2873 0.28 -0.4
3,010,277 - HP15_2873 0.28 -1.5
3,010,331 - HP15_2873 0.31 +0.4
3,010,332 - HP15_2873 0.31 -1.1
3,010,343 + HP15_2873 0.32 +0.2
3,010,392 + HP15_2873 0.35 -0.1
3,010,408 + HP15_2873 0.36 -0.3
3,010,449 - HP15_2873 0.38 +0.2
3,010,491 + HP15_2873 0.41 -1.2
3,010,533 + HP15_2873 0.43 -0.1
3,010,536 - HP15_2873 0.43 -0.1
3,010,559 + HP15_2873 0.45 -0.5
3,010,579 + HP15_2873 0.46 +1.8
3,010,589 + HP15_2873 0.47 -0.4
3,010,589 + HP15_2873 0.47 +0.1
3,010,589 + HP15_2873 0.47 -0.8
3,010,589 + HP15_2873 0.47 +0.1
3,010,589 + HP15_2873 0.47 -0.0
3,010,589 + HP15_2873 0.47 -0.5
3,010,589 + HP15_2873 0.47 +0.2
3,010,589 + HP15_2873 0.47 +1.0
3,010,589 + HP15_2873 0.47 +0.4
3,010,589 + HP15_2873 0.47 +0.1
3,010,592 - HP15_2873 0.47 -1.4
3,010,597 - HP15_2873 0.47 +0.6
3,010,597 - HP15_2873 0.47 +0.3
3,010,597 - HP15_2873 0.47 +1.0
3,010,597 - HP15_2873 0.47 -1.5
3,010,597 - HP15_2873 0.47 +0.5
3,010,599 + HP15_2873 0.47 -0.5
3,010,633 - HP15_2873 0.49 -0.8

Or see this region's nucleotide sequence