Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27695 and BWI76_RS27700 are separated by 3 nucleotides BWI76_RS27700 and BWI76_RS27705 are separated by 50 nucleotides
BWI76_RS27695: BWI76_RS27695 - multidrug efflux RND transporter permease subunit, at 5,745,353 to 5,748,460
_RS27695
BWI76_RS27700: BWI76_RS27700 - multidrug transporter, at 5,748,464 to 5,749,828
_RS27700
BWI76_RS27705: BWI76_RS27705 - Bcr/CflA family drug resistance efflux transporter, at 5,749,879 to 5,751,045
_RS27705
Position (kb) 5748
5749
5750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5747.536 kb on + strand, within BWI76_RS27695 at 5747.536 kb on + strand, within BWI76_RS27695 at 5747.558 kb on - strand, within BWI76_RS27695 at 5747.560 kb on + strand, within BWI76_RS27695 at 5747.604 kb on + strand, within BWI76_RS27695 at 5747.656 kb on - strand, within BWI76_RS27695 at 5747.866 kb on + strand at 5747.881 kb on - strand, within BWI76_RS27695 at 5748.054 kb on + strand, within BWI76_RS27695 at 5748.100 kb on + strand, within BWI76_RS27695 at 5748.115 kb on + strand, within BWI76_RS27695 at 5748.244 kb on - strand at 5748.524 kb on - strand at 5748.727 kb on - strand, within BWI76_RS27700 at 5748.766 kb on - strand, within BWI76_RS27700 at 5748.775 kb on + strand, within BWI76_RS27700 at 5748.827 kb on + strand, within BWI76_RS27700 at 5748.835 kb on - strand, within BWI76_RS27700 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.321 kb on - strand, within BWI76_RS27700 at 5749.351 kb on + strand, within BWI76_RS27700 at 5749.439 kb on - strand, within BWI76_RS27700 at 5749.491 kb on + strand, within BWI76_RS27700 at 5749.638 kb on - strand, within BWI76_RS27700 at 5749.673 kb on + strand, within BWI76_RS27700 at 5749.751 kb on + strand at 5749.986 kb on + strand at 5750.039 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.127 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.281 kb on + strand, within BWI76_RS27705 at 5750.357 kb on + strand, within BWI76_RS27705 at 5750.396 kb on + strand, within BWI76_RS27705 at 5750.403 kb on - strand at 5750.404 kb on - strand, within BWI76_RS27705 at 5750.521 kb on + strand, within BWI76_RS27705 at 5750.545 kb on - strand, within BWI76_RS27705 at 5750.559 kb on - strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.741 kb on + strand, within BWI76_RS27705
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 5,747,536 + BWI76_RS27695 0.70 +0.2 5,747,536 + BWI76_RS27695 0.70 -0.6 5,747,558 - BWI76_RS27695 0.71 -0.4 5,747,560 + BWI76_RS27695 0.71 -0.3 5,747,604 + BWI76_RS27695 0.72 +0.4 5,747,656 - BWI76_RS27695 0.74 +0.4 5,747,866 + +1.0 5,747,881 - BWI76_RS27695 0.81 -0.5 5,748,054 + BWI76_RS27695 0.87 -1.3 5,748,100 + BWI76_RS27695 0.88 -0.1 5,748,115 + BWI76_RS27695 0.89 -0.3 5,748,244 - -0.7 5,748,524 - +0.6 5,748,727 - BWI76_RS27700 0.19 +0.5 5,748,766 - BWI76_RS27700 0.22 -0.5 5,748,775 + BWI76_RS27700 0.23 -1.3 5,748,827 + BWI76_RS27700 0.27 -0.0 5,748,835 - BWI76_RS27700 0.27 +0.2 5,749,015 - BWI76_RS27700 0.40 +0.1 5,749,015 - BWI76_RS27700 0.40 -0.5 5,749,321 - BWI76_RS27700 0.63 +0.2 5,749,351 + BWI76_RS27700 0.65 +0.8 5,749,439 - BWI76_RS27700 0.71 -0.7 5,749,491 + BWI76_RS27700 0.75 -0.4 5,749,638 - BWI76_RS27700 0.86 +0.9 5,749,673 + BWI76_RS27700 0.89 -0.0 5,749,751 + -0.2 5,749,986 + +0.0 5,750,039 + BWI76_RS27705 0.14 -1.1 5,750,045 + BWI76_RS27705 0.14 +0.3 5,750,045 + BWI76_RS27705 0.14 +0.8 5,750,127 - BWI76_RS27705 0.21 -0.2 5,750,221 - BWI76_RS27705 0.29 -0.4 5,750,221 - BWI76_RS27705 0.29 +0.5 5,750,281 + BWI76_RS27705 0.34 -1.6 5,750,357 + BWI76_RS27705 0.41 +0.3 5,750,396 + BWI76_RS27705 0.44 -0.1 5,750,403 - +2.0 5,750,404 - BWI76_RS27705 0.45 -2.2 5,750,521 + BWI76_RS27705 0.55 -0.3 5,750,545 - BWI76_RS27705 0.57 +0.2 5,750,559 - BWI76_RS27705 0.58 +0.0 5,750,636 + BWI76_RS27705 0.65 +0.8 5,750,636 + BWI76_RS27705 0.65 -0.0 5,750,636 + BWI76_RS27705 0.65 +0.2 5,750,644 - BWI76_RS27705 0.66 -0.3 5,750,644 - BWI76_RS27705 0.66 -0.1 5,750,644 - BWI76_RS27705 0.66 -0.2 5,750,741 + BWI76_RS27705 0.74 +1.0
Or see this region's nucleotide sequence