Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19840

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19835 and BWI76_RS19840 are separated by 179 nucleotidesBWI76_RS19840 and BWI76_RS19845 are separated by 19 nucleotides BWI76_RS19835: BWI76_RS19835 - nucleoid-associated protein YejK, at 4,147,676 to 4,148,683 _RS19835 BWI76_RS19840: BWI76_RS19840 - hypothetical protein, at 4,148,863 to 4,149,090 _RS19840 BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870 _RS19845 Position (kb) 4148 4149 4150Strain fitness (log2 ratio) -3 -2 -1 0 1at 4147.977 kb on + strand, within BWI76_RS19835at 4147.995 kb on - strand, within BWI76_RS19835at 4148.466 kb on + strand, within BWI76_RS19835at 4148.466 kb on + strand, within BWI76_RS19835at 4148.474 kb on - strand, within BWI76_RS19835at 4148.829 kb on - strandat 4148.885 kb on + strandat 4148.948 kb on + strand, within BWI76_RS19840at 4149.685 kb on + strand, within BWI76_RS19845at 4149.976 kb on + strand, within BWI76_RS19845at 4149.999 kb on + strand, within BWI76_RS19845

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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4,147,977 + BWI76_RS19835 0.30 -0.2
4,147,995 - BWI76_RS19835 0.32 -0.6
4,148,466 + BWI76_RS19835 0.78 +0.4
4,148,466 + BWI76_RS19835 0.78 -1.0
4,148,474 - BWI76_RS19835 0.79 +0.1
4,148,829 - +1.4
4,148,885 + -0.5
4,148,948 + BWI76_RS19840 0.37 -1.7
4,149,685 + BWI76_RS19845 0.33 -3.5
4,149,976 + BWI76_RS19845 0.49 -1.1
4,149,999 + BWI76_RS19845 0.50 -3.5

Or see this region's nucleotide sequence