Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16525 and BWI76_RS16530 are separated by 31 nucleotides BWI76_RS16530 and BWI76_RS16535 are separated by 230 nucleotides BWI76_RS16535 and BWI76_RS16540 are separated by 197 nucleotides BWI76_RS16540 and BWI76_RS16545 are separated by 4 nucleotides BWI76_RS16545 and BWI76_RS16550 are separated by 4 nucleotides BWI76_RS16550 and BWI76_RS16555 are separated by 442 nucleotides
BWI76_RS16525: BWI76_RS16525 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,426,052 to 3,427,203
_RS16525
BWI76_RS16530: BWI76_RS16530 - riboflavin synthase subunit alpha, at 3,427,235 to 3,427,876
_RS16530
BWI76_RS16535: BWI76_RS16535 - MATE family efflux transporter, at 3,428,107 to 3,429,480
_RS16535
BWI76_RS16540: BWI76_RS16540 - tRNA-Val, at 3,429,678 to 3,429,754
_RS16540
BWI76_RS16545: BWI76_RS16545 - tRNA-Val, at 3,429,759 to 3,429,835
_RS16545
BWI76_RS16550: BWI76_RS16550 - tRNA-Val, at 3,429,840 to 3,429,916
_RS16550
BWI76_RS16555: BWI76_RS16555 - hypothetical protein, at 3,430,359 to 3,430,544
_RS16555
Position (kb) 3428
3429
3430 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3427.174 kb on + strand at 3427.186 kb on - strand at 3427.999 kb on + strand at 3428.019 kb on - strand at 3428.091 kb on + strand at 3428.091 kb on + strand at 3428.148 kb on + strand at 3428.176 kb on + strand at 3428.368 kb on - strand, within BWI76_RS16535 at 3428.432 kb on - strand, within BWI76_RS16535 at 3428.508 kb on + strand, within BWI76_RS16535 at 3428.741 kb on - strand, within BWI76_RS16535 at 3428.879 kb on - strand, within BWI76_RS16535 at 3429.214 kb on + strand, within BWI76_RS16535 at 3429.301 kb on - strand, within BWI76_RS16535 at 3429.311 kb on + strand, within BWI76_RS16535 at 3429.364 kb on + strand at 3429.446 kb on - strand at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.864 kb on + strand, within BWI76_RS16550 at 3429.874 kb on + strand, within BWI76_RS16550 at 3429.878 kb on + strand, within BWI76_RS16550 at 3429.909 kb on + strand at 3430.218 kb on - strand at 3430.272 kb on - strand at 3430.336 kb on + strand at 3430.336 kb on + strand at 3430.368 kb on + strand at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.433 kb on - strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 3,427,174 + +0.3 3,427,186 - +1.5 3,427,999 + +0.1 3,428,019 - -0.2 3,428,091 + -0.8 3,428,091 + +1.0 3,428,148 + -1.6 3,428,176 + -3.3 3,428,368 - BWI76_RS16535 0.19 -1.0 3,428,432 - BWI76_RS16535 0.24 -1.2 3,428,508 + BWI76_RS16535 0.29 -1.3 3,428,741 - BWI76_RS16535 0.46 -0.2 3,428,879 - BWI76_RS16535 0.56 -1.5 3,429,214 + BWI76_RS16535 0.81 -0.8 3,429,301 - BWI76_RS16535 0.87 -1.7 3,429,311 + BWI76_RS16535 0.88 -1.7 3,429,364 + -1.1 3,429,446 - -2.4 3,429,857 + BWI76_RS16550 0.22 +0.1 3,429,857 + BWI76_RS16550 0.22 -0.4 3,429,864 + BWI76_RS16550 0.31 +0.3 3,429,874 + BWI76_RS16550 0.44 -0.1 3,429,878 + BWI76_RS16550 0.49 -0.1 3,429,909 + -0.7 3,430,218 - -0.2 3,430,272 - +1.0 3,430,336 + -0.3 3,430,336 + +0.6 3,430,368 + -0.8 3,430,424 + BWI76_RS16555 0.35 +0.0 3,430,424 + BWI76_RS16555 0.35 -0.3 3,430,424 + BWI76_RS16555 0.35 +0.4 3,430,433 - BWI76_RS16555 0.40 -0.7 3,430,434 + BWI76_RS16555 0.40 +0.6 3,430,434 + BWI76_RS16555 0.40 +1.7 3,430,434 + BWI76_RS16555 0.40 -2.3 3,430,434 + +1.0 3,430,439 + BWI76_RS16555 0.43 -2.0 3,430,439 + BWI76_RS16555 0.43 +0.4 3,430,444 + BWI76_RS16555 0.46 +0.4 3,430,444 + BWI76_RS16555 0.46 +1.0
Or see this region's nucleotide sequence