Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08900 and BWI76_RS08905 are separated by 13 nucleotides BWI76_RS08905 and BWI76_RS08910 overlap by 1 nucleotides BWI76_RS08910 and BWI76_RS08915 are separated by 218 nucleotides
BWI76_RS08900: BWI76_RS08900 - putative short-chain dehydrogenase/reductase SDR, at 1,874,102 to 1,874,851
_RS08900
BWI76_RS08905: BWI76_RS08905 - transketolase, at 1,874,865 to 1,875,710
_RS08905
BWI76_RS08910: BWI76_RS08910 - transketolase domain-containing protein, at 1,875,710 to 1,876,702
_RS08910
BWI76_RS08915: BWI76_RS08915 - ATP-dependent RNA helicase RhlE, at 1,876,921 to 1,878,273
_RS08915
Position (kb) 1875
1876
1877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1874.779 kb on - strand at 1874.810 kb on + strand at 1874.951 kb on + strand, within BWI76_RS08905 at 1874.959 kb on - strand, within BWI76_RS08905 at 1874.967 kb on + strand, within BWI76_RS08905 at 1874.975 kb on - strand, within BWI76_RS08905 at 1875.195 kb on - strand, within BWI76_RS08905 at 1875.368 kb on - strand, within BWI76_RS08905 at 1875.447 kb on - strand, within BWI76_RS08905 at 1875.468 kb on + strand, within BWI76_RS08905 at 1875.590 kb on + strand, within BWI76_RS08905 at 1875.592 kb on + strand, within BWI76_RS08905 at 1876.162 kb on + strand, within BWI76_RS08910 at 1876.245 kb on - strand, within BWI76_RS08910 at 1876.257 kb on + strand, within BWI76_RS08910 at 1876.316 kb on - strand, within BWI76_RS08910 at 1876.316 kb on - strand, within BWI76_RS08910 at 1876.327 kb on + strand, within BWI76_RS08910 at 1876.374 kb on + strand, within BWI76_RS08910 at 1876.382 kb on - strand, within BWI76_RS08910 at 1876.424 kb on - strand, within BWI76_RS08910 at 1876.569 kb on - strand, within BWI76_RS08910 at 1876.645 kb on - strand at 1876.977 kb on + strand at 1876.982 kb on + strand at 1876.985 kb on - strand at 1877.066 kb on - strand, within BWI76_RS08915 at 1877.105 kb on + strand, within BWI76_RS08915 at 1877.165 kb on - strand, within BWI76_RS08915 at 1877.341 kb on - strand at 1877.349 kb on - strand, within BWI76_RS08915 at 1877.440 kb on - strand, within BWI76_RS08915 at 1877.478 kb on + strand, within BWI76_RS08915 at 1877.556 kb on + strand, within BWI76_RS08915 at 1877.564 kb on - strand, within BWI76_RS08915
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,874,779 - -0.4 1,874,810 + +0.1 1,874,951 + BWI76_RS08905 0.10 -1.4 1,874,959 - BWI76_RS08905 0.11 -1.6 1,874,967 + BWI76_RS08905 0.12 -0.2 1,874,975 - BWI76_RS08905 0.13 +0.4 1,875,195 - BWI76_RS08905 0.39 +0.1 1,875,368 - BWI76_RS08905 0.59 +0.3 1,875,447 - BWI76_RS08905 0.69 -0.1 1,875,468 + BWI76_RS08905 0.71 -0.0 1,875,590 + BWI76_RS08905 0.86 +0.4 1,875,592 + BWI76_RS08905 0.86 +0.0 1,876,162 + BWI76_RS08910 0.46 +0.2 1,876,245 - BWI76_RS08910 0.54 +0.3 1,876,257 + BWI76_RS08910 0.55 -0.7 1,876,316 - BWI76_RS08910 0.61 +0.6 1,876,316 - BWI76_RS08910 0.61 -0.2 1,876,327 + BWI76_RS08910 0.62 -1.0 1,876,374 + BWI76_RS08910 0.67 -1.1 1,876,382 - BWI76_RS08910 0.68 -1.7 1,876,424 - BWI76_RS08910 0.72 -0.5 1,876,569 - BWI76_RS08910 0.87 -0.0 1,876,645 - -0.3 1,876,977 + +0.0 1,876,982 + -1.0 1,876,985 - -3.1 1,877,066 - BWI76_RS08915 0.11 +0.2 1,877,105 + BWI76_RS08915 0.14 +0.2 1,877,165 - BWI76_RS08915 0.18 -2.3 1,877,341 - +2.2 1,877,349 - BWI76_RS08915 0.32 +0.3 1,877,440 - BWI76_RS08915 0.38 -0.3 1,877,478 + BWI76_RS08915 0.41 +1.6 1,877,556 + BWI76_RS08915 0.47 -0.1 1,877,564 - BWI76_RS08915 0.48 -0.8
Or see this region's nucleotide sequence