Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08755 and BWI76_RS08760 are separated by 85 nucleotides BWI76_RS08760 and BWI76_RS08765 overlap by 4 nucleotides
BWI76_RS08755: BWI76_RS08755 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,845,038 to 1,846,327
_RS08755
BWI76_RS08760: BWI76_RS08760 - biotin synthase, at 1,846,413 to 1,847,453
_RS08760
BWI76_RS08765: BWI76_RS08765 - 8-amino-7-oxononanoate synthase, at 1,847,450 to 1,848,607
_RS08765
Position (kb)
1846
1847
1848 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1845.557 kb on + strand, within BWI76_RS08755 at 1845.732 kb on + strand, within BWI76_RS08755 at 1845.852 kb on - strand, within BWI76_RS08755 at 1845.936 kb on + strand, within BWI76_RS08755 at 1846.147 kb on + strand, within BWI76_RS08755 at 1846.183 kb on - strand, within BWI76_RS08755 at 1846.408 kb on + strand at 1846.536 kb on - strand, within BWI76_RS08760 at 1846.653 kb on + strand, within BWI76_RS08760 at 1846.747 kb on + strand, within BWI76_RS08760 at 1846.872 kb on + strand, within BWI76_RS08760 at 1846.937 kb on - strand, within BWI76_RS08760 at 1847.691 kb on + strand, within BWI76_RS08765 at 1847.826 kb on - strand, within BWI76_RS08765 at 1848.089 kb on + strand, within BWI76_RS08765
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,845,557 + BWI76_RS08755 0.40 -1.2 1,845,732 + BWI76_RS08755 0.54 +1.2 1,845,852 - BWI76_RS08755 0.63 -0.2 1,845,936 + BWI76_RS08755 0.70 -0.3 1,846,147 + BWI76_RS08755 0.86 -0.0 1,846,183 - BWI76_RS08755 0.89 +0.2 1,846,408 + -1.0 1,846,536 - BWI76_RS08760 0.12 -1.5 1,846,653 + BWI76_RS08760 0.23 -1.4 1,846,747 + BWI76_RS08760 0.32 -2.7 1,846,872 + BWI76_RS08760 0.44 -3.0 1,846,937 - BWI76_RS08760 0.50 -2.3 1,847,691 + BWI76_RS08765 0.21 -0.7 1,847,826 - BWI76_RS08765 0.32 -2.8 1,848,089 + BWI76_RS08765 0.55 -1.2
Or see this region's nucleotide sequence