Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06790

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotidesBWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotidesBWI76_RS06790 and BWI76_RS06795 are separated by 36 nucleotidesBWI76_RS06795 and BWI76_RS06800 are separated by 66 nucleotidesBWI76_RS06800 and BWI76_RS06805 are separated by 14 nucleotides BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205 _RS06780 BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998 _RS06785 BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470 _RS06790 BWI76_RS06795: BWI76_RS06795 - hypothetical protein, at 1,427,507 to 1,428,067 _RS06795 BWI76_RS06800: BWI76_RS06800 - DUF2496 domain-containing protein, at 1,428,134 to 1,428,307 _RS06800 BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849 _RS06805 Position (kb) 1424 1425 1426 1427 1428Strain fitness (log2 ratio) -1 0 1 2at 1423.140 kb on - strandat 1423.142 kb on + strandat 1423.161 kb on + strandat 1423.430 kb on + strand, within BWI76_RS06785at 1423.562 kb on - strand, within BWI76_RS06785at 1423.660 kb on + strand, within BWI76_RS06785at 1423.786 kb on - strand, within BWI76_RS06785at 1423.786 kb on - strand, within BWI76_RS06785at 1423.906 kb on - strand, within BWI76_RS06785at 1423.906 kb on - strand, within BWI76_RS06785at 1423.916 kb on - strand, within BWI76_RS06785at 1423.916 kb on - strand, within BWI76_RS06785at 1423.976 kb on + strandat 1424.132 kb on - strandat 1424.132 kb on - strandat 1424.626 kb on + strand, within BWI76_RS06790at 1424.780 kb on - strand, within BWI76_RS06790at 1424.792 kb on - strand, within BWI76_RS06790at 1424.951 kb on + strand, within BWI76_RS06790at 1425.067 kb on + strand, within BWI76_RS06790at 1425.231 kb on - strand, within BWI76_RS06790at 1425.238 kb on + strand, within BWI76_RS06790at 1425.246 kb on - strand, within BWI76_RS06790at 1425.303 kb on - strand, within BWI76_RS06790at 1425.305 kb on + strand, within BWI76_RS06790at 1425.332 kb on + strand, within BWI76_RS06790at 1425.374 kb on - strand, within BWI76_RS06790at 1425.403 kb on - strand, within BWI76_RS06790at 1425.412 kb on + strand, within BWI76_RS06790at 1425.477 kb on - strand, within BWI76_RS06790at 1425.516 kb on + strand, within BWI76_RS06790at 1425.746 kb on - strand, within BWI76_RS06790at 1425.781 kb on + strand, within BWI76_RS06790at 1425.900 kb on - strand, within BWI76_RS06790at 1426.252 kb on + strand, within BWI76_RS06790at 1426.260 kb on - strand, within BWI76_RS06790at 1426.356 kb on - strand, within BWI76_RS06790at 1426.525 kb on + strand, within BWI76_RS06790at 1426.575 kb on + strand, within BWI76_RS06790at 1426.583 kb on - strand, within BWI76_RS06790at 1426.583 kb on - strand, within BWI76_RS06790at 1426.594 kb on - strand, within BWI76_RS06790at 1426.865 kb on - strand, within BWI76_RS06790at 1426.970 kb on + strand, within BWI76_RS06790at 1427.027 kb on + strand, within BWI76_RS06790at 1427.120 kb on - strand, within BWI76_RS06790at 1427.169 kb on - strandat 1427.169 kb on - strandat 1427.176 kb on + strandat 1427.333 kb on + strandat 1427.341 kb on - strandat 1427.442 kb on - strandat 1427.707 kb on + strand, within BWI76_RS06795at 1427.840 kb on + strand, within BWI76_RS06795at 1427.848 kb on - strand, within BWI76_RS06795at 1427.871 kb on + strand, within BWI76_RS06795at 1427.879 kb on - strand, within BWI76_RS06795at 1428.046 kb on + strandat 1428.274 kb on + strand, within BWI76_RS06800at 1428.450 kb on - strand, within BWI76_RS06805

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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1,423,140 - -1.2
1,423,142 + +0.0
1,423,161 + -1.3
1,423,430 + BWI76_RS06785 0.13 +0.6
1,423,562 - BWI76_RS06785 0.33 +0.1
1,423,660 + BWI76_RS06785 0.48 -0.4
1,423,786 - BWI76_RS06785 0.67 +1.2
1,423,786 - BWI76_RS06785 0.67 +0.0
1,423,906 - BWI76_RS06785 0.86 -1.4
1,423,906 - BWI76_RS06785 0.86 +0.6
1,423,916 - BWI76_RS06785 0.87 -0.1
1,423,916 - BWI76_RS06785 0.87 -0.1
1,423,976 + -0.2
1,424,132 - +0.4
1,424,132 - +0.5
1,424,626 + BWI76_RS06790 0.15 +1.1
1,424,780 - BWI76_RS06790 0.19 +0.3
1,424,792 - BWI76_RS06790 0.20 +0.1
1,424,951 + BWI76_RS06790 0.25 +1.0
1,425,067 + BWI76_RS06790 0.28 +0.8
1,425,231 - BWI76_RS06790 0.33 +0.6
1,425,238 + BWI76_RS06790 0.33 +2.1
1,425,246 - BWI76_RS06790 0.33 +0.8
1,425,303 - BWI76_RS06790 0.35 +0.9
1,425,305 + BWI76_RS06790 0.35 +0.2
1,425,332 + BWI76_RS06790 0.36 +0.2
1,425,374 - BWI76_RS06790 0.37 +0.4
1,425,403 - BWI76_RS06790 0.38 -0.2
1,425,412 + BWI76_RS06790 0.38 +0.8
1,425,477 - BWI76_RS06790 0.40 +0.5
1,425,516 + BWI76_RS06790 0.42 +0.6
1,425,746 - BWI76_RS06790 0.48 -0.4
1,425,781 + BWI76_RS06790 0.49 +0.8
1,425,900 - BWI76_RS06790 0.53 +0.9
1,426,252 + BWI76_RS06790 0.64 +0.9
1,426,260 - BWI76_RS06790 0.64 +0.4
1,426,356 - BWI76_RS06790 0.67 +0.1
1,426,525 + BWI76_RS06790 0.72 -0.1
1,426,575 + BWI76_RS06790 0.73 +0.6
1,426,583 - BWI76_RS06790 0.73 -0.1
1,426,583 - BWI76_RS06790 0.73 +1.0
1,426,594 - BWI76_RS06790 0.74 +0.7
1,426,865 - BWI76_RS06790 0.82 +0.7
1,426,970 + BWI76_RS06790 0.85 +0.4
1,427,027 + BWI76_RS06790 0.87 +0.8
1,427,120 - BWI76_RS06790 0.89 +0.9
1,427,169 - +0.1
1,427,169 - +1.2
1,427,176 + +1.0
1,427,333 + +1.2
1,427,341 - +0.5
1,427,442 - +0.2
1,427,707 + BWI76_RS06795 0.36 -0.3
1,427,840 + BWI76_RS06795 0.59 +0.4
1,427,848 - BWI76_RS06795 0.61 +0.2
1,427,871 + BWI76_RS06795 0.65 -0.2
1,427,879 - BWI76_RS06795 0.66 +0.5
1,428,046 + -0.8
1,428,274 + BWI76_RS06800 0.80 -1.1
1,428,450 - BWI76_RS06805 0.24 -0.2

Or see this region's nucleotide sequence