Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotides BWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotides BWI76_RS06790 and BWI76_RS06795 are separated by 36 nucleotides BWI76_RS06795 and BWI76_RS06800 are separated by 66 nucleotides BWI76_RS06800 and BWI76_RS06805 are separated by 14 nucleotides
BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205
_RS06780
BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998
_RS06785
BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470
_RS06790
BWI76_RS06795: BWI76_RS06795 - hypothetical protein, at 1,427,507 to 1,428,067
_RS06795
BWI76_RS06800: BWI76_RS06800 - DUF2496 domain-containing protein, at 1,428,134 to 1,428,307
_RS06800
BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849
_RS06805
Position (kb)
1424
1425
1426
1427
1428 Strain fitness (log2 ratio)
-1
0
1
2 at 1423.140 kb on - strand at 1423.142 kb on + strand at 1423.161 kb on + strand at 1423.430 kb on + strand, within BWI76_RS06785 at 1423.562 kb on - strand, within BWI76_RS06785 at 1423.660 kb on + strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.976 kb on + strand at 1424.132 kb on - strand at 1424.132 kb on - strand at 1424.626 kb on + strand, within BWI76_RS06790 at 1424.780 kb on - strand, within BWI76_RS06790 at 1424.792 kb on - strand, within BWI76_RS06790 at 1424.951 kb on + strand, within BWI76_RS06790 at 1425.067 kb on + strand, within BWI76_RS06790 at 1425.231 kb on - strand, within BWI76_RS06790 at 1425.238 kb on + strand, within BWI76_RS06790 at 1425.246 kb on - strand, within BWI76_RS06790 at 1425.303 kb on - strand, within BWI76_RS06790 at 1425.305 kb on + strand, within BWI76_RS06790 at 1425.332 kb on + strand, within BWI76_RS06790 at 1425.374 kb on - strand, within BWI76_RS06790 at 1425.403 kb on - strand, within BWI76_RS06790 at 1425.412 kb on + strand, within BWI76_RS06790 at 1425.477 kb on - strand, within BWI76_RS06790 at 1425.516 kb on + strand, within BWI76_RS06790 at 1425.746 kb on - strand, within BWI76_RS06790 at 1425.781 kb on + strand, within BWI76_RS06790 at 1425.900 kb on - strand, within BWI76_RS06790 at 1426.252 kb on + strand, within BWI76_RS06790 at 1426.260 kb on - strand, within BWI76_RS06790 at 1426.356 kb on - strand, within BWI76_RS06790 at 1426.525 kb on + strand, within BWI76_RS06790 at 1426.575 kb on + strand, within BWI76_RS06790 at 1426.583 kb on - strand, within BWI76_RS06790 at 1426.583 kb on - strand, within BWI76_RS06790 at 1426.594 kb on - strand, within BWI76_RS06790 at 1426.865 kb on - strand, within BWI76_RS06790 at 1426.970 kb on + strand, within BWI76_RS06790 at 1427.027 kb on + strand, within BWI76_RS06790 at 1427.120 kb on - strand, within BWI76_RS06790 at 1427.169 kb on - strand at 1427.169 kb on - strand at 1427.176 kb on + strand at 1427.333 kb on + strand at 1427.341 kb on - strand at 1427.442 kb on - strand at 1427.707 kb on + strand, within BWI76_RS06795 at 1427.840 kb on + strand, within BWI76_RS06795 at 1427.848 kb on - strand, within BWI76_RS06795 at 1427.871 kb on + strand, within BWI76_RS06795 at 1427.879 kb on - strand, within BWI76_RS06795 at 1428.046 kb on + strand at 1428.274 kb on + strand, within BWI76_RS06800 at 1428.450 kb on - strand, within BWI76_RS06805
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,423,140 - -1.2 1,423,142 + +0.0 1,423,161 + -1.3 1,423,430 + BWI76_RS06785 0.13 +0.6 1,423,562 - BWI76_RS06785 0.33 +0.1 1,423,660 + BWI76_RS06785 0.48 -0.4 1,423,786 - BWI76_RS06785 0.67 +1.2 1,423,786 - BWI76_RS06785 0.67 +0.0 1,423,906 - BWI76_RS06785 0.86 -1.4 1,423,906 - BWI76_RS06785 0.86 +0.6 1,423,916 - BWI76_RS06785 0.87 -0.1 1,423,916 - BWI76_RS06785 0.87 -0.1 1,423,976 + -0.2 1,424,132 - +0.4 1,424,132 - +0.5 1,424,626 + BWI76_RS06790 0.15 +1.1 1,424,780 - BWI76_RS06790 0.19 +0.3 1,424,792 - BWI76_RS06790 0.20 +0.1 1,424,951 + BWI76_RS06790 0.25 +1.0 1,425,067 + BWI76_RS06790 0.28 +0.8 1,425,231 - BWI76_RS06790 0.33 +0.6 1,425,238 + BWI76_RS06790 0.33 +2.1 1,425,246 - BWI76_RS06790 0.33 +0.8 1,425,303 - BWI76_RS06790 0.35 +0.9 1,425,305 + BWI76_RS06790 0.35 +0.2 1,425,332 + BWI76_RS06790 0.36 +0.2 1,425,374 - BWI76_RS06790 0.37 +0.4 1,425,403 - BWI76_RS06790 0.38 -0.2 1,425,412 + BWI76_RS06790 0.38 +0.8 1,425,477 - BWI76_RS06790 0.40 +0.5 1,425,516 + BWI76_RS06790 0.42 +0.6 1,425,746 - BWI76_RS06790 0.48 -0.4 1,425,781 + BWI76_RS06790 0.49 +0.8 1,425,900 - BWI76_RS06790 0.53 +0.9 1,426,252 + BWI76_RS06790 0.64 +0.9 1,426,260 - BWI76_RS06790 0.64 +0.4 1,426,356 - BWI76_RS06790 0.67 +0.1 1,426,525 + BWI76_RS06790 0.72 -0.1 1,426,575 + BWI76_RS06790 0.73 +0.6 1,426,583 - BWI76_RS06790 0.73 -0.1 1,426,583 - BWI76_RS06790 0.73 +1.0 1,426,594 - BWI76_RS06790 0.74 +0.7 1,426,865 - BWI76_RS06790 0.82 +0.7 1,426,970 + BWI76_RS06790 0.85 +0.4 1,427,027 + BWI76_RS06790 0.87 +0.8 1,427,120 - BWI76_RS06790 0.89 +0.9 1,427,169 - +0.1 1,427,169 - +1.2 1,427,176 + +1.0 1,427,333 + +1.2 1,427,341 - +0.5 1,427,442 - +0.2 1,427,707 + BWI76_RS06795 0.36 -0.3 1,427,840 + BWI76_RS06795 0.59 +0.4 1,427,848 - BWI76_RS06795 0.61 +0.2 1,427,871 + BWI76_RS06795 0.65 -0.2 1,427,879 - BWI76_RS06795 0.66 +0.5 1,428,046 + -0.8 1,428,274 + BWI76_RS06800 0.80 -1.1 1,428,450 - BWI76_RS06805 0.24 -0.2
Or see this region's nucleotide sequence