Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03095 and BWI76_RS03100 are separated by 41 nucleotides BWI76_RS03100 and BWI76_RS03105 are separated by 24 nucleotides BWI76_RS03105 and BWI76_RS03110 are separated by 168 nucleotides
BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) <small>(from data)</small>, at 637,168 to 638,181
_RS03095
BWI76_RS03100: BWI76_RS03100 - protein iolH, at 638,223 to 639,107
_RS03100
BWI76_RS03105: BWI76_RS03105 - myo-inosose-2 dehydratase, at 639,132 to 640,031
_RS03105
BWI76_RS03110: BWI76_RS03110 - MFS transporter, at 640,200 to 641,699
_RS03110
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 638.203 kb on + strand at 638.221 kb on - strand at 638.257 kb on + strand at 638.597 kb on - strand, within BWI76_RS03100 at 638.782 kb on + strand, within BWI76_RS03100 at 638.801 kb on - strand, within BWI76_RS03100 at 638.887 kb on - strand, within BWI76_RS03100 at 638.951 kb on + strand, within BWI76_RS03100 at 638.959 kb on - strand, within BWI76_RS03100 at 639.037 kb on - strand at 639.070 kb on + strand at 639.071 kb on - strand at 639.071 kb on - strand at 639.214 kb on - strand at 639.769 kb on - strand, within BWI76_RS03105 at 640.112 kb on - strand at 640.133 kb on + strand at 640.141 kb on - strand at 640.191 kb on - strand at 640.247 kb on - strand at 640.352 kb on - strand, within BWI76_RS03110 at 640.388 kb on - strand, within BWI76_RS03110 at 640.447 kb on - strand, within BWI76_RS03110 at 640.660 kb on - strand, within BWI76_RS03110 at 640.894 kb on - strand, within BWI76_RS03110 at 640.981 kb on - strand, within BWI76_RS03110 at 641.008 kb on - strand, within BWI76_RS03110
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 638,203 + -2.4 638,221 - +0.7 638,257 + +0.3 638,597 - BWI76_RS03100 0.42 +0.1 638,782 + BWI76_RS03100 0.63 +0.9 638,801 - BWI76_RS03100 0.65 +0.0 638,887 - BWI76_RS03100 0.75 +0.0 638,951 + BWI76_RS03100 0.82 +0.1 638,959 - BWI76_RS03100 0.83 +0.4 639,037 - +0.4 639,070 + +0.6 639,071 - -1.9 639,071 - +3.5 639,214 - +0.2 639,769 - BWI76_RS03105 0.71 -1.0 640,112 - +0.1 640,133 + +0.4 640,141 - -1.1 640,191 - +0.3 640,247 - -0.4 640,352 - BWI76_RS03110 0.10 +1.5 640,388 - BWI76_RS03110 0.13 -0.4 640,447 - BWI76_RS03110 0.16 +0.8 640,660 - BWI76_RS03110 0.31 -0.4 640,894 - BWI76_RS03110 0.46 -0.1 640,981 - BWI76_RS03110 0.52 +0.5 641,008 - BWI76_RS03110 0.54 -0.0
Or see this region's nucleotide sequence