Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0089
Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
120,398 | + | DVUA0088 | 0.61 | -0.2 | |
120,408 | - | DVUA0088 | 0.62 | -0.1 | |
120,419 | + | DVUA0088 | 0.63 | +0.2 | |
120,425 | - | DVUA0088 | 0.64 | +1.4 | |
120,461 | - | DVUA0088 | 0.67 | +0.6 | |
120,539 | + | DVUA0088 | 0.75 | -1.0 | |
120,539 | + | DVUA0088 | 0.75 | -0.5 | |
120,613 | + | DVUA0088 | 0.82 | -0.1 | |
120,673 | + | DVUA0088 | 0.88 | +1.2 | |
120,708 | + | -1.1 | |||
120,765 | + | -0.1 | |||
120,920 | + | -0.0 | |||
120,928 | - | -0.4 | |||
120,928 | - | -0.4 | |||
120,941 | + | +0.2 | |||
120,953 | + | -0.9 | |||
120,998 | - | -0.1 | |||
121,031 | - | -0.7 | |||
121,161 | + | -0.7 | |||
121,161 | + | -0.2 | |||
121,294 | - | -0.2 | |||
121,366 | - | DVUA0089 | 0.12 | -1.1 | |
122,242 | - | -1.4 | |||
122,245 | - | -0.4 | |||
122,297 | + | -0.1 | |||
122,297 | + | +1.0 | |||
122,316 | + | +1.1 | |||
122,331 | + | -0.1 | |||
122,331 | + | -0.4 | |||
122,341 | + | +0.2 | |||
122,341 | + | -0.5 | |||
122,341 | + | +0.4 | |||
122,349 | - | +0.1 | |||
122,409 | + | -0.7 | |||
122,477 | + | -0.4 | |||
122,486 | - | -0.2 | |||
122,498 | + | -0.5 | |||
122,506 | - | -1.2 | |||
122,506 | - | -0.0 | |||
122,556 | + | -0.3 | |||
122,589 | - | DVUA0090 | 0.12 | -0.1 | |
122,615 | - | DVUA0090 | 0.15 | +0.1 | |
122,818 | - | DVUA0090 | 0.38 | -0.8 | |
122,878 | - | DVUA0090 | 0.45 | -0.2 | |
122,905 | + | DVUA0090 | 0.48 | +0.2 |
Or see this region's nucleotide sequence