Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0394

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntung and DVU0394 are separated by 239 nucleotidesDVU0394 and hit are separated by 227 nucleotideshit and hup-1 are separated by 27 nucleotides DVU0393: ung - uracil-DNA glycosylase (TIGR), at 441,764 to 442,501 ung DVU0394: DVU0394 - radical SAM domain protein (TIGR), at 442,741 to 443,763 DVU0394 DVU0395: hit - HIT family protein (TIGR), at 443,991 to 444,410 hit DVU0396: hup-1 - DNA-binding protein HU (TIGR), at 444,438 to 444,725 hup-1 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1 2at 441.877 kb on + strand, within ungat 441.898 kb on + strand, within ungat 441.903 kb on + strand, within ungat 441.941 kb on - strand, within ungat 441.955 kb on - strand, within ungat 441.985 kb on - strand, within ungat 441.985 kb on - strand, within ungat 442.073 kb on - strand, within ungat 442.159 kb on + strand, within ungat 442.164 kb on + strand, within ungat 442.202 kb on - strand, within ungat 442.229 kb on - strand, within ungat 442.238 kb on + strand, within ungat 442.245 kb on + strand, within ungat 442.285 kb on + strand, within ungat 442.313 kb on - strand, within ungat 442.364 kb on - strand, within ungat 442.378 kb on - strand, within ungat 442.394 kb on + strand, within ungat 442.401 kb on + strand, within ungat 442.453 kb on + strandat 442.547 kb on + strandat 442.629 kb on + strandat 442.629 kb on + strandat 442.631 kb on + strandat 442.631 kb on + strandat 442.637 kb on - strandat 442.723 kb on - strandat 442.725 kb on + strandat 443.812 kb on - strandat 444.050 kb on + strand, within hitat 444.050 kb on + strand, within hitat 444.053 kb on - strand, within hitat 444.058 kb on - strand, within hitat 444.176 kb on + strand, within hitat 444.234 kb on + strand, within hitat 444.242 kb on - strand, within hitat 444.242 kb on - strand, within hitat 444.394 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM)
remove
441,877 + ung DVU0393 0.15 -0.2
441,898 + ung DVU0393 0.18 -1.5
441,903 + ung DVU0393 0.19 +0.5
441,941 - ung DVU0393 0.24 +0.9
441,955 - ung DVU0393 0.26 -0.9
441,985 - ung DVU0393 0.30 +0.4
441,985 - ung DVU0393 0.30 -0.4
442,073 - ung DVU0393 0.42 -0.1
442,159 + ung DVU0393 0.54 -0.1
442,164 + ung DVU0393 0.54 -0.2
442,202 - ung DVU0393 0.59 +0.2
442,229 - ung DVU0393 0.63 +0.2
442,238 + ung DVU0393 0.64 +1.0
442,245 + ung DVU0393 0.65 +0.7
442,285 + ung DVU0393 0.71 +0.3
442,313 - ung DVU0393 0.74 +0.2
442,364 - ung DVU0393 0.81 +0.5
442,378 - ung DVU0393 0.83 -0.7
442,394 + ung DVU0393 0.85 -0.2
442,401 + ung DVU0393 0.86 -0.2
442,453 + -0.6
442,547 + -0.5
442,629 + -0.2
442,629 + +0.1
442,631 + +0.1
442,631 + +0.2
442,637 - -0.6
442,723 - -0.1
442,725 + +0.7
443,812 - -0.0
444,050 + hit DVU0395 0.14 -0.1
444,050 + hit DVU0395 0.14 +0.7
444,053 - hit DVU0395 0.15 +0.3
444,058 - hit DVU0395 0.16 +0.5
444,176 + hit DVU0395 0.44 -0.2
444,234 + hit DVU0395 0.58 -0.5
444,242 - hit DVU0395 0.60 +0.4
444,242 - hit DVU0395 0.60 +2.0
444,394 - -0.3

Or see this region's nucleotide sequence