Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0132

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0130 and DVU0132 are separated by 542 nucleotidesDVU0132 and DVU0133 are separated by 1 nucleotides DVU0130: DVU0130 - phosphoglycolate phosphatase, putative (TIGR), at 167,030 to 167,692 DVU0130 DVU0132: DVU0132 - membrane protein, putative (TIGR), at 168,235 to 169,359 DVU0132 DVU0133: DVU0133 - hypothetical protein (TIGR), at 169,361 to 170,083 DVU0133 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 167.240 kb on + strand, within DVU0130at 167.245 kb on - strand, within DVU0130at 167.248 kb on - strand, within DVU0130at 167.308 kb on - strand, within DVU0130at 167.343 kb on + strand, within DVU0130at 167.350 kb on + strand, within DVU0130at 167.351 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.398 kb on + strand, within DVU0130at 167.456 kb on + strand, within DVU0130at 167.464 kb on - strand, within DVU0130at 167.492 kb on - strand, within DVU0130at 167.497 kb on - strand, within DVU0130at 167.500 kb on + strand, within DVU0130at 167.513 kb on - strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.698 kb on + strandat 167.706 kb on - strandat 167.706 kb on - strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.723 kb on - strandat 167.723 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.769 kb on - strandat 167.784 kb on + strandat 168.046 kb on + strandat 168.073 kb on + strandat 168.196 kb on - strandat 168.347 kb on + strandat 168.380 kb on + strand, within DVU0132at 168.403 kb on + strand, within DVU0132at 168.432 kb on + strand, within DVU0132at 168.432 kb on + strand, within DVU0132at 168.440 kb on - strand, within DVU0132at 168.494 kb on + strand, within DVU0132at 168.581 kb on - strand, within DVU0132at 168.603 kb on + strand, within DVU0132at 168.699 kb on - strand, within DVU0132at 168.787 kb on - strand, within DVU0132at 168.924 kb on + strand, within DVU0132at 168.941 kb on + strand, within DVU0132at 168.949 kb on - strand, within DVU0132at 169.038 kb on - strand, within DVU0132at 169.056 kb on + strand, within DVU0132at 169.056 kb on + strand, within DVU0132at 169.064 kb on - strand, within DVU0132at 169.109 kb on + strand, within DVU0132at 169.127 kb on - strand, within DVU0132at 169.127 kb on - strand, within DVU0132at 169.228 kb on - strand, within DVU0132at 169.328 kb on - strandat 169.341 kb on + strandat 169.353 kb on + strandat 169.353 kb on + strandat 169.353 kb on + strandat 169.361 kb on - strandat 169.361 kb on - strandat 169.399 kb on + strandat 169.478 kb on + strand, within DVU0133at 169.483 kb on + strand, within DVU0133at 169.547 kb on - strand, within DVU0133at 169.684 kb on + strand, within DVU0133at 169.684 kb on + strand, within DVU0133at 169.684 kb on + strand, within DVU0133at 169.711 kb on - strand, within DVU0133at 169.714 kb on - strand, within DVU0133at 169.817 kb on + strand, within DVU0133at 169.831 kb on + strand, within DVU0133at 169.831 kb on + strand, within DVU0133at 169.831 kb on + strand, within DVU0133at 169.832 kb on + strand, within DVU0133at 169.839 kb on - strand, within DVU0133at 169.851 kb on - strand, within DVU0133at 169.857 kb on - strand, within DVU0133at 169.998 kb on - strand, within DVU0133at 170.019 kb on + strandat 170.059 kb on + strandat 170.067 kb on - strandat 170.067 kb on - strandat 170.078 kb on + strandat 170.078 kb on + strandat 170.078 kb on + strandat 170.086 kb on - strandat 170.086 kb on - strandat 170.086 kb on - strandat 170.167 kb on + strandat 170.211 kb on + strandat 170.234 kb on - strandat 170.330 kb on - strandat 170.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM)
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167,240 + DVU0130 0.32 -0.1
167,245 - DVU0130 0.32 -0.1
167,248 - DVU0130 0.33 -1.2
167,308 - DVU0130 0.42 +0.3
167,343 + DVU0130 0.47 +0.1
167,350 + DVU0130 0.48 -0.1
167,351 - DVU0130 0.48 -1.0
167,381 - DVU0130 0.53 -0.3
167,381 - DVU0130 0.53 +1.0
167,398 + DVU0130 0.56 +0.7
167,456 + DVU0130 0.64 -0.4
167,464 - DVU0130 0.65 +1.1
167,492 - DVU0130 0.70 +0.2
167,497 - DVU0130 0.70 +1.3
167,500 + DVU0130 0.71 -0.7
167,513 - DVU0130 0.73 +0.6
167,528 + DVU0130 0.75 -0.6
167,528 + DVU0130 0.75 -0.7
167,698 + -0.3
167,706 - +0.3
167,706 - -0.6
167,720 + +0.3
167,720 + -0.5
167,720 + -0.6
167,720 + +0.1
167,723 - -0.4
167,723 - +0.0
167,728 - -1.6
167,728 - -0.3
167,728 - +0.1
167,728 - -1.2
167,769 - +1.5
167,784 + -1.9
168,046 + -1.9
168,073 + -1.7
168,196 - -0.7
168,347 + -0.8
168,380 + DVU0132 0.13 -1.2
168,403 + DVU0132 0.15 -1.0
168,432 + DVU0132 0.18 -1.1
168,432 + DVU0132 0.18 +1.3
168,440 - DVU0132 0.18 -0.3
168,494 + DVU0132 0.23 -2.6
168,581 - DVU0132 0.31 -1.1
168,603 + DVU0132 0.33 -0.3
168,699 - DVU0132 0.41 -0.4
168,787 - DVU0132 0.49 -0.9
168,924 + DVU0132 0.61 -0.4
168,941 + DVU0132 0.63 -0.4
168,949 - DVU0132 0.63 -0.8
169,038 - DVU0132 0.71 -1.7
169,056 + DVU0132 0.73 -1.6
169,056 + DVU0132 0.73 -1.1
169,064 - DVU0132 0.74 +0.1
169,109 + DVU0132 0.78 +0.4
169,127 - DVU0132 0.79 +0.0
169,127 - DVU0132 0.79 -0.4
169,228 - DVU0132 0.88 +0.1
169,328 - -0.7
169,341 + -1.8
169,353 + -0.9
169,353 + -0.8
169,353 + +0.0
169,361 - -0.6
169,361 - -1.3
169,399 + -0.7
169,478 + DVU0133 0.16 -0.2
169,483 + DVU0133 0.17 -0.8
169,547 - DVU0133 0.26 -0.8
169,684 + DVU0133 0.45 -0.8
169,684 + DVU0133 0.45 -0.6
169,684 + DVU0133 0.45 +0.9
169,711 - DVU0133 0.48 -1.0
169,714 - DVU0133 0.49 +0.2
169,817 + DVU0133 0.63 -0.6
169,831 + DVU0133 0.65 -1.3
169,831 + DVU0133 0.65 -1.8
169,831 + DVU0133 0.65 -0.4
169,832 + DVU0133 0.65 -1.3
169,839 - DVU0133 0.66 -0.4
169,851 - DVU0133 0.68 +0.1
169,857 - DVU0133 0.69 -0.1
169,998 - DVU0133 0.88 -1.3
170,019 + -0.9
170,059 + -0.3
170,067 - -0.3
170,067 - -0.7
170,078 + -2.9
170,078 + -0.0
170,078 + +0.9
170,086 - +0.3
170,086 - +0.8
170,086 - -0.4
170,167 + -0.6
170,211 + -0.2
170,234 - +0.4
170,330 - +0.1
170,354 + -0.1

Or see this region's nucleotide sequence