Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0110

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/30-60 mM)
141,691	-				-0.4
141,693	+	hydH	DVU0109	0.10	-0.6
141,697	-	hydH	DVU0109	0.10	-0.3
141,711	+	hydH	DVU0109	0.12	-0.5
141,721	+	hydH	DVU0109	0.13	-1.5
141,775	+	hydH	DVU0109	0.18	-0.2
141,783	-	hydH	DVU0109	0.18	+1.4
141,837	-	hydH	DVU0109	0.23	-0.2
141,838	-	hydH	DVU0109	0.23	-0.4
141,928	+	hydH	DVU0109	0.31	-2.0
141,928	+	hydH	DVU0109	0.31	-1.1
141,944	-	hydH	DVU0109	0.33	-0.3
142,049	+	hydH	DVU0109	0.42	+0.1
142,092	+	hydH	DVU0109	0.46	-1.8
142,100	-	hydH	DVU0109	0.47	-0.2
142,113	+	hydH	DVU0109	0.48	+0.0
142,194	+	hydH	DVU0109	0.55	-1.4
142,194	+	hydH	DVU0109	0.55	-1.0
142,202	-	hydH	DVU0109	0.56	+0.2
142,253	-	hydH	DVU0109	0.61	-0.3
142,300	-	hydH	DVU0109	0.65	+0.3
142,302	+	hydH	DVU0109	0.65	-0.2
142,316	+	hydH	DVU0109	0.66	-1.8
142,329	-	hydH	DVU0109	0.68	+0.1
142,330	-	hydH	DVU0109	0.68	-0.2
142,350	-	hydH	DVU0109	0.69	-0.3
142,357	+	hydH	DVU0109	0.70	-0.3
142,365	-	hydH	DVU0109	0.71	-0.3
142,365	-	hydH	DVU0109	0.71	+0.1
142,365	-	hydH	DVU0109	0.71	-0.7
142,393	-	hydH	DVU0109	0.73	-0.2
142,409	-	hydH	DVU0109	0.75	+0.1
142,454	+	hydH	DVU0109	0.79	-0.2
142,538	+	hydH	DVU0109	0.86	-0.5
142,551	+	hydH	DVU0109	0.88	-1.0
142,564	-	hydH	DVU0109	0.89	-0.4
142,644	-				-0.8
142,671	-				+1.2
142,676	-				-1.5
142,680	+				-0.6
142,719	-				-1.2
142,753	-				-1.3
142,789	-				+0.6
142,850	+	ntrC	DVU0110	0.12	-0.9
142,850	+	ntrC	DVU0110	0.12	-0.3
142,858	-	ntrC	DVU0110	0.13	+0.0
142,894	-	ntrC	DVU0110	0.16	-0.1
142,969	+	ntrC	DVU0110	0.21	-2.8
142,990	+	ntrC	DVU0110	0.22	-1.5
142,998	-	ntrC	DVU0110	0.23	-0.8
143,007	+	ntrC	DVU0110	0.23	-0.7
143,125	+	ntrC	DVU0110	0.32	+0.4
143,247	+	ntrC	DVU0110	0.40	-1.1
143,253	-	ntrC	DVU0110	0.41	-1.0
143,255	-	ntrC	DVU0110	0.41	-0.1
143,257	-	ntrC	DVU0110	0.41	-1.5
143,287	+	ntrC	DVU0110	0.43	+0.4
143,287	+	ntrC	DVU0110	0.43	-0.7
143,293	-	ntrC	DVU0110	0.43	-0.6
143,323	+	ntrC	DVU0110	0.45	-1.1
143,341	-	ntrC	DVU0110	0.47	-0.7
143,346	-	ntrC	DVU0110	0.47	-1.0
143,357	+	ntrC	DVU0110	0.48	+0.2
143,362	+	ntrC	DVU0110	0.48	-0.4
143,365	-	ntrC	DVU0110	0.48	-0.1
143,370	-	ntrC	DVU0110	0.49	-2.0
143,433	+	ntrC	DVU0110	0.53	+0.1
143,526	+	ntrC	DVU0110	0.60	-0.1
143,565	+	ntrC	DVU0110	0.62	+0.6
143,568	+	ntrC	DVU0110	0.63	-0.3
143,571	-	ntrC	DVU0110	0.63	-0.6
143,584	-	ntrC	DVU0110	0.64	-1.0
143,584	-	ntrC	DVU0110	0.64	-0.3
143,591	+	ntrC	DVU0110	0.64	-0.4
143,638	-	ntrC	DVU0110	0.68	-0.8
143,689	-	ntrC	DVU0110	0.71	-0.7
143,689	-	ntrC	DVU0110	0.71	-0.6
143,782	+	ntrC	DVU0110	0.78	-1.2
143,916	+	ntrC	DVU0110	0.87	-0.9
143,916	+	ntrC	DVU0110	0.87	-1.3
143,931	-	ntrC	DVU0110	0.88	+0.1
143,944	-	ntrC	DVU0110	0.89	-0.5
143,986	+				-0.4
144,101	-				-0.3
144,183	+				-0.3
144,255	+				-0.4
144,263	+				-0.2
144,263	+				-0.5
144,271	-				-0.2
144,273	-				-1.4
144,287	+				-0.6
144,287	+				-0.2
144,300	-				-0.2
144,386	+		DVU0111	0.19	-0.1
144,497	+		DVU0111	0.32	-0.1
144,585	-		DVU0111	0.43	-0.4
144,713	+		DVU0111	0.59	-1.7
144,723	+		DVU0111	0.60	+0.2
144,730	-		DVU0111	0.61	+0.2
144,765	+		DVU0111	0.66	+0.0
144,822	+		DVU0111	0.73	-0.1
144,829	-		DVU0111	0.73	+0.7
144,845	-		DVU0111	0.75	+0.5
144,850	+		DVU0111	0.76	-0.1
144,872	+		DVU0111	0.79	+0.0
144,880	-		DVU0111	0.80	-0.6
144,887	-		DVU0111	0.81	-0.1
144,939	-		DVU0111	0.87	+0.5
144,955	+		DVU0111	0.89	-1.2
144,988	+				-0.3
144,995	-				+0.5
145,027	+				-0.2
145,074	-				-2.9