Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0084 and trpB-1 are separated by 516 nucleotides trpB-1 and rrsA are separated by 491 nucleotides
DVU0084: DVU0084 - translation initiation factor, aIF-2BI family, putative (TIGR), at 102,596 to 103,648
DVU0084
DVU0085: trpB-1 - tryptophan synthase, beta subunit (TIGR), at 104,165 to 105,409
trpB-1
Dv16SA: rrsA - 16S ribosomal RNA (RefSeq), at 105,901 to 107,441
rrsA
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.189 kb on - strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.213 kb on - strand, within DVU0084 at 103.306 kb on + strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.353 kb on + strand, within DVU0084 at 103.361 kb on - strand, within DVU0084 at 103.363 kb on + strand, within DVU0084 at 103.366 kb on - strand, within DVU0084 at 103.371 kb on - strand, within DVU0084 at 103.377 kb on + strand, within DVU0084 at 103.417 kb on - strand, within DVU0084 at 103.489 kb on + strand, within DVU0084 at 103.515 kb on + strand, within DVU0084 at 103.560 kb on + strand at 103.611 kb on - strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.716 kb on + strand at 103.719 kb on - strand at 103.728 kb on - strand at 103.739 kb on + strand at 103.739 kb on + strand at 103.851 kb on + strand at 103.851 kb on + strand at 103.859 kb on - strand at 103.862 kb on - strand at 103.896 kb on - strand at 103.971 kb on + strand at 103.979 kb on - strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 104.083 kb on + strand at 104.140 kb on - strand at 104.170 kb on - strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.283 kb on + strand at 104.293 kb on + strand, within trpB-1 at 104.299 kb on + strand, within trpB-1 at 104.313 kb on - strand, within trpB-1 at 104.364 kb on + strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.448 kb on - strand, within trpB-1 at 104.458 kb on + strand, within trpB-1 at 104.464 kb on - strand, within trpB-1 at 104.521 kb on + strand, within trpB-1 at 104.531 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.566 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.588 kb on + strand, within trpB-1 at 104.599 kb on - strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.637 kb on - strand, within trpB-1 at 104.659 kb on + strand, within trpB-1 at 104.659 kb on + strand, within trpB-1 at 104.688 kb on + strand, within trpB-1 at 104.726 kb on - strand, within trpB-1 at 104.734 kb on - strand, within trpB-1 at 104.754 kb on - strand, within trpB-1 at 104.821 kb on - strand, within trpB-1 at 104.896 kb on + strand, within trpB-1 at 104.956 kb on + strand, within trpB-1 at 104.975 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.980 kb on + strand, within trpB-1 at 104.997 kb on + strand, within trpB-1 at 105.010 kb on - strand, within trpB-1 at 105.010 kb on - strand, within trpB-1 at 105.034 kb on - strand, within trpB-1 at 105.036 kb on + strand, within trpB-1 at 105.067 kb on + strand, within trpB-1 at 105.068 kb on + strand, within trpB-1 at 105.069 kb on - strand, within trpB-1 at 105.091 kb on - strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.101 kb on + strand, within trpB-1 at 105.106 kb on + strand, within trpB-1 at 105.106 kb on + strand, within trpB-1 at 105.109 kb on - strand, within trpB-1 at 105.109 kb on - strand, within trpB-1 at 105.123 kb on + strand, within trpB-1 at 105.131 kb on - strand, within trpB-1 at 105.146 kb on - strand, within trpB-1 at 105.154 kb on - strand, within trpB-1 at 105.201 kb on + strand, within trpB-1 at 105.211 kb on + strand, within trpB-1 at 105.237 kb on + strand, within trpB-1 at 105.274 kb on - strand, within trpB-1 at 105.356 kb on - strand at 105.372 kb on + strand at 105.383 kb on + strand at 105.391 kb on - strand at 105.395 kb on + strand at 105.395 kb on - strand at 105.422 kb on + strand at 105.427 kb on + strand at 105.440 kb on - strand at 105.477 kb on - strand at 105.492 kb on + strand at 105.500 kb on - strand at 105.502 kb on + strand at 105.510 kb on - strand at 105.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 103,189 - DVU0084 0.56 +0.9 103,210 + DVU0084 0.58 +0.7 103,210 + DVU0084 0.58 -0.2 103,213 - DVU0084 0.59 -0.2 103,306 + DVU0084 0.67 -0.2 103,319 - DVU0084 0.69 -0.2 103,319 - DVU0084 0.69 -1.5 103,333 - DVU0084 0.70 +0.2 103,333 - DVU0084 0.70 +0.1 103,353 + DVU0084 0.72 +0.5 103,361 - DVU0084 0.73 -0.0 103,363 + DVU0084 0.73 -0.3 103,366 - DVU0084 0.73 +0.9 103,371 - DVU0084 0.74 -1.3 103,377 + DVU0084 0.74 +1.1 103,417 - DVU0084 0.78 +1.2 103,489 + DVU0084 0.85 +0.5 103,515 + DVU0084 0.87 -0.3 103,560 + +0.1 103,611 - -0.9 103,711 + +0.0 103,711 + +0.7 103,716 + -0.7 103,719 - +0.4 103,728 - -0.4 103,739 + -0.4 103,739 + +0.1 103,851 + -0.0 103,851 + -0.6 103,859 - -0.6 103,862 - +0.2 103,896 - -0.5 103,971 + +0.1 103,979 - +0.7 103,983 + -0.7 103,983 + -0.4 103,983 + -0.5 103,983 + -0.6 103,991 - -0.9 103,991 - -0.7 103,991 - -0.1 103,991 - -0.2 103,991 - -0.0 104,083 + +0.0 104,140 - -1.9 104,170 - +0.0 104,244 - +0.2 104,244 - -1.0 104,251 + +0.8 104,251 + +0.0 104,251 + +0.1 104,251 + -0.6 104,259 - -1.7 104,259 - +0.1 104,259 - +0.4 104,259 - -0.3 104,283 + +0.6 104,293 + trpB-1 DVU0085 0.10 +0.3 104,299 + trpB-1 DVU0085 0.11 +0.6 104,313 - trpB-1 DVU0085 0.12 +0.1 104,364 + trpB-1 DVU0085 0.16 -0.1 104,384 - trpB-1 DVU0085 0.18 +0.2 104,384 - trpB-1 DVU0085 0.18 -0.2 104,395 + trpB-1 DVU0085 0.18 -0.2 104,395 + trpB-1 DVU0085 0.18 +0.0 104,395 + trpB-1 DVU0085 0.18 +0.7 104,395 + trpB-1 DVU0085 0.18 +0.4 104,403 - trpB-1 DVU0085 0.19 -0.2 104,403 - trpB-1 DVU0085 0.19 -0.1 104,403 - trpB-1 DVU0085 0.19 -0.0 104,403 - trpB-1 DVU0085 0.19 +0.6 104,403 - trpB-1 DVU0085 0.19 +0.5 104,448 - trpB-1 DVU0085 0.23 +1.4 104,458 + trpB-1 DVU0085 0.24 -0.5 104,464 - trpB-1 DVU0085 0.24 -0.0 104,521 + trpB-1 DVU0085 0.29 +0.6 104,531 + trpB-1 DVU0085 0.29 -0.2 104,536 + trpB-1 DVU0085 0.30 +0.9 104,536 + trpB-1 DVU0085 0.30 -2.0 104,566 + trpB-1 DVU0085 0.32 +0.7 104,569 + trpB-1 DVU0085 0.32 -0.3 104,569 + trpB-1 DVU0085 0.32 -0.2 104,588 + trpB-1 DVU0085 0.34 -0.3 104,599 - trpB-1 DVU0085 0.35 +0.3 104,600 + trpB-1 DVU0085 0.35 -0.9 104,600 + trpB-1 DVU0085 0.35 -0.4 104,637 - trpB-1 DVU0085 0.38 +0.3 104,659 + trpB-1 DVU0085 0.40 -0.4 104,659 + trpB-1 DVU0085 0.40 -0.3 104,688 + trpB-1 DVU0085 0.42 +0.3 104,726 - trpB-1 DVU0085 0.45 -0.1 104,734 - trpB-1 DVU0085 0.46 -0.1 104,754 - trpB-1 DVU0085 0.47 +0.2 104,821 - trpB-1 DVU0085 0.53 -0.2 104,896 + trpB-1 DVU0085 0.59 -0.3 104,956 + trpB-1 DVU0085 0.64 +1.2 104,975 + trpB-1 DVU0085 0.65 -0.6 104,980 + trpB-1 DVU0085 0.65 -0.1 104,980 + trpB-1 DVU0085 0.65 +1.9 104,980 + trpB-1 DVU0085 0.65 -0.0 104,997 + trpB-1 DVU0085 0.67 +0.2 105,010 - trpB-1 DVU0085 0.68 -0.4 105,010 - trpB-1 DVU0085 0.68 -0.2 105,034 - trpB-1 DVU0085 0.70 +0.6 105,036 + trpB-1 DVU0085 0.70 +0.6 105,067 + trpB-1 DVU0085 0.72 -0.3 105,068 + trpB-1 DVU0085 0.73 -0.1 105,069 - trpB-1 DVU0085 0.73 +0.9 105,091 - trpB-1 DVU0085 0.74 -0.4 105,101 + trpB-1 DVU0085 0.75 -0.1 105,101 + trpB-1 DVU0085 0.75 +0.8 105,101 + trpB-1 DVU0085 0.75 -0.2 105,106 + trpB-1 DVU0085 0.76 -0.0 105,106 + trpB-1 DVU0085 0.76 +0.2 105,109 - trpB-1 DVU0085 0.76 +0.1 105,109 - trpB-1 DVU0085 0.76 +0.1 105,123 + trpB-1 DVU0085 0.77 -0.2 105,131 - trpB-1 DVU0085 0.78 -0.0 105,146 - trpB-1 DVU0085 0.79 -0.0 105,154 - trpB-1 DVU0085 0.79 +1.6 105,201 + trpB-1 DVU0085 0.83 -0.1 105,211 + trpB-1 DVU0085 0.84 -0.0 105,237 + trpB-1 DVU0085 0.86 -0.0 105,274 - trpB-1 DVU0085 0.89 -0.3 105,356 - +0.2 105,372 + +1.2 105,383 + +0.0 105,391 - +0.1 105,395 + -0.5 105,395 - -0.2 105,422 + -0.6 105,427 + +0.0 105,440 - +0.0 105,477 - +0.1 105,492 + -0.1 105,500 - -0.2 105,502 + +1.0 105,510 - +0.2 105,659 + -0.3
Or see this region's nucleotide sequence