Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lgt and DVU0016 are separated by 139 nucleotides DVU0016 and tRNA-Ala are separated by 55 nucleotides tRNA-Ala and DVU0018 are separated by 165 nucleotides
DVU0015: lgt - prolipoprotein diacylglyceryl transferase (TIGR), at 18,804 to 19,595
lgt
DVU0016: DVU0016 - hypothetical protein (TIGR), at 19,735 to 19,839
DVU0016
DVU_tRNA-Ala-1: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 19,895 to 19,970
tRNA-Ala
DVU0018: DVU0018 - methyl-accepting chemotaxis protein, putative (TIGR), at 20,136 to 22,385
DVU0018
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 18.747 kb on - strand at 18.811 kb on + strand at 19.630 kb on + strand at 19.688 kb on + strand at 19.696 kb on - strand at 19.698 kb on + strand at 19.711 kb on + strand at 19.719 kb on - strand at 19.719 kb on - strand at 19.719 kb on - strand at 19.766 kb on - strand, within DVU0016 at 19.784 kb on - strand, within DVU0016 at 20.042 kb on + strand at 20.051 kb on - strand at 20.052 kb on - strand at 20.134 kb on - strand at 20.141 kb on - strand at 20.286 kb on + strand at 20.289 kb on - strand at 20.315 kb on - strand at 20.326 kb on + strand at 20.359 kb on - strand at 20.360 kb on + strand at 20.367 kb on + strand, within DVU0018 at 20.546 kb on + strand, within DVU0018 at 20.590 kb on - strand, within DVU0018 at 20.596 kb on - strand, within DVU0018 at 20.621 kb on + strand, within DVU0018 at 20.621 kb on + strand, within DVU0018 at 20.627 kb on + strand, within DVU0018 at 20.627 kb on + strand, within DVU0018 at 20.629 kb on - strand, within DVU0018 at 20.629 kb on - strand, within DVU0018 at 20.660 kb on + strand, within DVU0018 at 20.660 kb on + strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.668 kb on - strand, within DVU0018 at 20.720 kb on + strand, within DVU0018 at 20.720 kb on + strand, within DVU0018 at 20.756 kb on + strand, within DVU0018 at 20.836 kb on + strand, within DVU0018
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 18,747 - -0.1 18,811 + +0.2 19,630 + +0.4 19,688 + +0.0 19,696 - +0.1 19,698 + -0.2 19,711 + -0.6 19,719 - +0.4 19,719 - -0.2 19,719 - -0.8 19,766 - DVU0016 0.30 -1.0 19,784 - DVU0016 0.47 -0.6 20,042 + +0.4 20,051 - +0.0 20,052 - -0.3 20,134 - +0.0 20,141 - -0.1 20,286 + -0.4 20,289 - -1.9 20,315 - +0.6 20,326 + +0.2 20,359 - -0.2 20,360 + +1.3 20,367 + DVU0018 0.10 -0.0 20,546 + DVU0018 0.18 -0.8 20,590 - DVU0018 0.20 -0.8 20,596 - DVU0018 0.20 -0.7 20,621 + DVU0018 0.22 -0.1 20,621 + DVU0018 0.22 -0.3 20,627 + DVU0018 0.22 -0.2 20,627 + DVU0018 0.22 -0.2 20,629 - DVU0018 0.22 +0.0 20,629 - DVU0018 0.22 -0.1 20,660 + DVU0018 0.23 -0.9 20,660 + DVU0018 0.23 -0.7 20,668 - DVU0018 0.24 +0.2 20,668 - DVU0018 0.24 +0.3 20,668 - DVU0018 0.24 -2.3 20,720 + DVU0018 0.26 +0.4 20,720 + DVU0018 0.26 -0.0 20,756 + DVU0018 0.28 +0.3 20,836 + DVU0018 0.31 -1.0
Or see this region's nucleotide sequence