Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0014

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0013 and infA-1 are separated by 199 nucleotidesinfA-1 and lgt are separated by 115 nucleotides DVU0013: DVU0013 - sensory box histidine kinase (TIGR), at 16,462 to 18,270 DVU0013 DVU0014: infA-1 - translation initiation factor IF-1 (TIGR), at 18,470 to 18,688 infA-1 DVU0015: lgt - prolipoprotein diacylglyceryl transferase (TIGR), at 18,804 to 19,595 lgt Position (kb) 18 19Strain fitness (log2 ratio) -1 0 1at 17.772 kb on - strand, within DVU0013at 17.781 kb on + strand, within DVU0013at 17.803 kb on + strand, within DVU0013at 17.810 kb on + strand, within DVU0013at 17.932 kb on + strand, within DVU0013at 18.039 kb on - strand, within DVU0013at 18.124 kb on + strandat 18.124 kb on + strandat 18.154 kb on + strandat 18.206 kb on - strandat 18.290 kb on + strandat 18.395 kb on + strandat 18.457 kb on - strandat 18.516 kb on - strand, within infA-1at 18.635 kb on + strand, within infA-1at 18.635 kb on + strand, within infA-1at 18.656 kb on + strand, within infA-1at 18.747 kb on - strandat 18.811 kb on + strandat 19.630 kb on + strandat 19.688 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM)
remove
17,772 - DVU0013 0.72 -0.2
17,781 + DVU0013 0.73 +1.0
17,803 + DVU0013 0.74 +0.3
17,810 + DVU0013 0.75 -0.0
17,932 + DVU0013 0.81 -0.1
18,039 - DVU0013 0.87 +0.9
18,124 + -1.1
18,124 + +0.0
18,154 + +0.5
18,206 - -1.0
18,290 + -0.9
18,395 + -1.2
18,457 - +0.7
18,516 - infA-1 DVU0014 0.21 -0.2
18,635 + infA-1 DVU0014 0.75 -0.8
18,635 + infA-1 DVU0014 0.75 -1.1
18,656 + infA-1 DVU0014 0.85 -0.6
18,747 - -0.1
18,811 + +0.2
19,630 + +0.4
19,688 + +0.0

Or see this region's nucleotide sequence