Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3110

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/30-60 mM)
3,257,706	+	nhaC-2	DVU3108	0.62	-1.3
3,257,726	+	nhaC-2	DVU3108	0.64	+0.0
3,257,760	+	nhaC-2	DVU3108	0.66	-0.6
3,257,815	-	nhaC-2	DVU3108	0.70	-0.3
3,257,832	+	nhaC-2	DVU3108	0.71	-0.1
3,257,878	+	nhaC-2	DVU3108	0.74	+1.0
3,257,936	-	nhaC-2	DVU3108	0.78	-0.4
3,258,038	+	nhaC-2	DVU3108	0.85	-0.2
3,258,162	+				-0.4
3,258,165	-				-0.4
3,258,170	-				-0.6
3,258,196	+				+0.1
3,258,196	+				-1.1
3,258,204	-				-0.5
3,258,222	+				-0.5
3,258,326	-				-0.6
3,258,398	+				-0.8
3,258,407	-				-0.1
3,258,411	+				-0.3
3,258,419	-				-2.6
3,258,429	-				+0.1
3,258,454	+				-0.0
3,258,492	+		DVU3109	0.26	-0.1
3,258,531	+		DVU3109	0.45	-0.1
3,258,606	-		DVU3109	0.83	+0.1
3,258,626	-				+0.3
3,258,678	+				-0.3
3,258,773	-				-0.1
3,258,945	+		DVU3110	0.15	+0.0
3,259,061	-		DVU3110	0.22	-0.4
3,259,066	-		DVU3110	0.22	-0.3
3,259,156	-		DVU3110	0.28	-0.6
3,259,178	+		DVU3110	0.29	+0.1
3,259,199	+		DVU3110	0.30	+0.6
3,259,347	-		DVU3110	0.39	+0.1
3,259,350	+		DVU3110	0.39	-0.1
3,259,430	+		DVU3110	0.44	+1.0
3,259,455	+		DVU3110	0.45	+0.1
3,259,463	-		DVU3110	0.45	+1.1
3,259,463	-		DVU3110	0.45	-0.0
3,259,483	+		DVU3110	0.47	+0.1
3,259,530	+		DVU3110	0.49	+0.8
3,259,567	+		DVU3110	0.52	-0.7
3,259,575	-		DVU3110	0.52	-0.2
3,259,612	+		DVU3110	0.54	+1.2
3,259,620	-		DVU3110	0.55	+1.0
3,259,674	+		DVU3110	0.58	-0.4
3,259,703	+		DVU3110	0.59	-0.2
3,259,729	-		DVU3110	0.61	-0.2
3,259,756	-		DVU3110	0.62	-0.2
3,259,780	-		DVU3110	0.64	-0.2
3,259,790	-		DVU3110	0.64	+0.1
3,259,790	-		DVU3110	0.64	-0.1
3,259,858	-		DVU3110	0.68	+0.2
3,259,884	-		DVU3110	0.70	+0.0
3,259,985	-		DVU3110	0.76	+0.8
3,260,039	+		DVU3110	0.79	+0.8
3,260,083	+		DVU3110	0.81	+0.8
3,260,183	+		DVU3110	0.87	+0.7
3,260,184	-		DVU3110	0.87	-0.4
3,260,209	+		DVU3110	0.89	-0.6
3,260,227	-		DVU3110	0.90	+0.0
3,260,251	-				-0.2
3,260,268	+				+0.8
3,260,308	+				+0.1
3,260,316	-				-0.3
3,260,378	+				-0.7
3,260,386	-				-0.9
3,260,457	+				-0.3
3,260,465	-				-1.1
3,260,472	+				+0.1
3,260,614	-				-2.3
3,260,614	-				-0.4
3,260,620	+				-0.6
3,260,628	-				-0.4
3,260,695	+				-0.0
3,260,722	+				-1.0
3,260,732	+		DVU3111	0.10	-0.6
3,260,805	-		DVU3111	0.19	-0.4
3,260,950	-		DVU3111	0.37	-0.4
3,261,022	-		DVU3111	0.46	-0.1
3,261,075	-		DVU3111	0.53	-0.2
3,261,207	-		DVU3111	0.69	+1.0
3,261,212	-		DVU3111	0.70	-0.1
3,261,279	-		DVU3111	0.78	-0.0
3,261,313	-		DVU3111	0.82	+0.3
3,261,377	+				+0.3
3,261,390	-				+0.0
3,261,397	+				+0.0