Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1884

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1882 and DVU1883 overlap by 4 nucleotidesDVU1883 and DVU1884 are separated by 226 nucleotidesDVU1884 and gatB are separated by 324 nucleotides DVU1882: DVU1882 - HDIG domain protein (TIGR), at 1,950,678 to 1,953,038 DVU1882 DVU1883: DVU1883 - conserved hypothetical protein (TIGR), at 1,953,035 to 1,953,523 DVU1883 DVU1884: DVU1884 - methyl-accepting chemotaxis protein (TIGR), at 1,953,750 to 1,956,152 DVU1884 DVU1885: gatB - glutamyl-tRNA(Gln) amidotransferase, B subunit (TIGR), at 1,956,477 to 1,957,907 gatB Position (kb) 1953 1954 1955 1956 1957Strain fitness (log2 ratio) -2 -1 0 1at 1952.832 kb on - strandat 1952.832 kb on - strandat 1952.838 kb on + strandat 1952.914 kb on - strandat 1952.914 kb on - strandat 1953.633 kb on + strandat 1953.638 kb on + strandat 1953.653 kb on + strandat 1953.653 kb on + strandat 1953.738 kb on + strandat 1953.970 kb on + strandat 1954.198 kb on + strand, within DVU1884at 1954.250 kb on + strand, within DVU1884at 1954.297 kb on + strand, within DVU1884at 1954.394 kb on + strand, within DVU1884at 1954.443 kb on - strand, within DVU1884at 1954.624 kb on + strand, within DVU1884at 1954.624 kb on + strand, within DVU1884at 1954.776 kb on - strand, within DVU1884at 1954.787 kb on + strand, within DVU1884at 1954.787 kb on + strand, within DVU1884at 1954.795 kb on - strand, within DVU1884at 1954.827 kb on + strand, within DVU1884at 1954.862 kb on + strand, within DVU1884at 1954.872 kb on + strand, within DVU1884at 1955.058 kb on - strand, within DVU1884at 1955.217 kb on - strand, within DVU1884at 1955.607 kb on + strand, within DVU1884at 1955.607 kb on + strand, within DVU1884at 1955.653 kb on + strand, within DVU1884at 1955.707 kb on + strand, within DVU1884at 1955.715 kb on - strand, within DVU1884at 1955.715 kb on - strand, within DVU1884at 1955.717 kb on - strand, within DVU1884at 1955.812 kb on + strand, within DVU1884at 1955.835 kb on + strand, within DVU1884at 1956.006 kb on - strandat 1956.062 kb on + strandat 1956.062 kb on + strandat 1956.195 kb on + strandat 1956.195 kb on + strandat 1956.195 kb on + strandat 1956.203 kb on - strandat 1956.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM)
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1,952,832 - -0.7
1,952,832 - -0.0
1,952,838 + +0.3
1,952,914 - -0.0
1,952,914 - +0.1
1,953,633 + +0.0
1,953,638 + -0.6
1,953,653 + +0.2
1,953,653 + +0.3
1,953,738 + -0.3
1,953,970 + -0.4
1,954,198 + DVU1884 0.19 -0.7
1,954,250 + DVU1884 0.21 +0.1
1,954,297 + DVU1884 0.23 -0.1
1,954,394 + DVU1884 0.27 +0.0
1,954,443 - DVU1884 0.29 -0.6
1,954,624 + DVU1884 0.36 -0.3
1,954,624 + DVU1884 0.36 -1.1
1,954,776 - DVU1884 0.43 -0.8
1,954,787 + DVU1884 0.43 -2.3
1,954,787 + DVU1884 0.43 -1.0
1,954,795 - DVU1884 0.43 -0.3
1,954,827 + DVU1884 0.45 -0.1
1,954,862 + DVU1884 0.46 -1.0
1,954,872 + DVU1884 0.47 -1.4
1,955,058 - DVU1884 0.54 -0.1
1,955,217 - DVU1884 0.61 -0.1
1,955,607 + DVU1884 0.77 -0.0
1,955,607 + DVU1884 0.77 -0.9
1,955,653 + DVU1884 0.79 -0.1
1,955,707 + DVU1884 0.81 -0.8
1,955,715 - DVU1884 0.82 -0.3
1,955,715 - DVU1884 0.82 +0.2
1,955,717 - DVU1884 0.82 -1.0
1,955,812 + DVU1884 0.86 -0.1
1,955,835 + DVU1884 0.87 +0.1
1,956,006 - -1.0
1,956,062 + +0.5
1,956,062 + +0.1
1,956,195 + -0.2
1,956,195 + -1.7
1,956,195 + -0.5
1,956,203 - +0.1
1,956,437 - -0.1

Or see this region's nucleotide sequence