Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1748 and DVU1750 are separated by 221 nucleotides DVU1750 and DVU1751 are separated by 192 nucleotides DVU1751 and DVU1752 are separated by 380 nucleotides
DVU1748: DVU1748 - conserved hypothetical protein (TIGR), at 1,816,342 to 1,818,114
DVU1748
DVU1750: DVU1750 - hypothetical protein (TIGR), at 1,818,336 to 1,819,118
DVU1750
DVU1751: DVU1751 - hypothetical protein (TIGR), at 1,819,311 to 1,819,457
DVU1751
DVU1752: DVU1752 - hypothetical protein (TIGR), at 1,819,838 to 1,820,077
DVU1752
Position (kb)
1818
1819
1820 Strain fitness (log2 ratio)
-1
0
1 at 1817.849 kb on + strand, within DVU1748 at 1818.016 kb on + strand at 1818.024 kb on - strand at 1818.099 kb on + strand at 1818.142 kb on - strand at 1818.372 kb on + strand at 1818.380 kb on - strand at 1818.380 kb on - strand at 1818.422 kb on + strand, within DVU1750 at 1818.430 kb on - strand, within DVU1750 at 1818.548 kb on + strand, within DVU1750 at 1818.568 kb on + strand, within DVU1750 at 1818.583 kb on + strand, within DVU1750 at 1818.586 kb on - strand, within DVU1750 at 1818.591 kb on - strand, within DVU1750 at 1818.600 kb on - strand, within DVU1750 at 1818.611 kb on + strand, within DVU1750 at 1818.635 kb on - strand, within DVU1750 at 1818.702 kb on - strand, within DVU1750 at 1818.715 kb on + strand, within DVU1750 at 1818.720 kb on + strand, within DVU1750 at 1818.792 kb on - strand, within DVU1750 at 1818.797 kb on - strand, within DVU1750 at 1818.831 kb on - strand, within DVU1750 at 1818.846 kb on - strand, within DVU1750 at 1818.924 kb on - strand, within DVU1750 at 1818.924 kb on - strand, within DVU1750 at 1819.036 kb on - strand, within DVU1750 at 1819.502 kb on + strand at 1819.618 kb on + strand at 1819.770 kb on + strand at 1819.885 kb on - strand, within DVU1752 at 1819.912 kb on + strand, within DVU1752 at 1819.941 kb on + strand, within DVU1752 at 1819.956 kb on - strand, within DVU1752 at 1820.019 kb on + strand, within DVU1752 at 1820.032 kb on - strand, within DVU1752 at 1820.036 kb on - strand, within DVU1752 at 1820.043 kb on + strand, within DVU1752 at 1820.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 1,817,849 + DVU1748 0.85 -0.4 1,818,016 + +0.9 1,818,024 - -1.5 1,818,099 + +0.1 1,818,142 - -0.2 1,818,372 + -0.2 1,818,380 - -0.4 1,818,380 - -0.3 1,818,422 + DVU1750 0.11 -0.3 1,818,430 - DVU1750 0.12 -0.3 1,818,548 + DVU1750 0.27 -0.3 1,818,568 + DVU1750 0.30 -0.6 1,818,583 + DVU1750 0.32 -0.3 1,818,586 - DVU1750 0.32 -0.2 1,818,591 - DVU1750 0.33 -1.4 1,818,600 - DVU1750 0.34 -0.2 1,818,611 + DVU1750 0.35 -0.5 1,818,635 - DVU1750 0.38 -0.2 1,818,702 - DVU1750 0.47 -0.4 1,818,715 + DVU1750 0.48 -0.9 1,818,720 + DVU1750 0.49 -0.3 1,818,792 - DVU1750 0.58 -0.6 1,818,797 - DVU1750 0.59 -0.2 1,818,831 - DVU1750 0.63 -1.6 1,818,846 - DVU1750 0.65 -0.5 1,818,924 - DVU1750 0.75 -0.7 1,818,924 - DVU1750 0.75 -0.4 1,819,036 - DVU1750 0.89 +0.4 1,819,502 + -0.2 1,819,618 + -0.1 1,819,770 + -0.3 1,819,885 - DVU1752 0.20 -0.4 1,819,912 + DVU1752 0.31 -0.4 1,819,941 + DVU1752 0.43 +0.2 1,819,956 - DVU1752 0.49 -0.1 1,820,019 + DVU1752 0.75 -0.3 1,820,032 - DVU1752 0.81 +0.4 1,820,036 - DVU1752 0.82 +0.1 1,820,043 + DVU1752 0.85 +0.6 1,820,077 + -0.1
Or see this region's nucleotide sequence