Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1029
Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
1,132,531 | + | +0.8 | |||
1,132,679 | - | +0.1 | |||
1,132,716 | + | -0.3 | |||
1,133,499 | + | +0.1 | |||
1,133,499 | + | -0.3 | |||
1,133,507 | - | -0.5 | |||
1,133,706 | - | hisC | DVU1029 | 0.26 | -2.6 |
1,133,762 | - | hisC | DVU1029 | 0.31 | -1.6 |
1,133,798 | + | hisC | DVU1029 | 0.35 | -1.3 |
1,133,981 | + | hisC | DVU1029 | 0.51 | +0.5 |
1,133,989 | - | hisC | DVU1029 | 0.52 | -0.8 |
1,134,535 | - | -0.6 | |||
1,134,680 | - | +1.1 | |||
1,134,685 | + | -0.4 | |||
1,134,695 | + | -0.1 | |||
1,134,703 | - | -0.7 | |||
1,134,703 | - | +0.1 | |||
1,134,718 | + | +1.1 | |||
1,134,774 | + | -0.1 | |||
1,134,922 | + | DVU1030 | 0.28 | +1.0 | |
1,134,925 | + | DVU1030 | 0.29 | -0.1 | |
1,134,976 | + | DVU1030 | 0.40 | +0.6 | |
1,135,070 | + | DVU1030 | 0.61 | -0.1 | |
1,135,186 | + | DVU1030 | 0.87 | -2.2 | |
1,135,484 | - | +0.1 |
Or see this region's nucleotide sequence