Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14065 and BWI76_RS14070 are separated by 5 nucleotides BWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotides BWI76_RS14075 and BWI76_RS14080 are separated by 11 nucleotides
BWI76_RS14065: BWI76_RS14065 - hypothetical protein, at 2,939,961 to 2,940,386
_RS14065
BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952
_RS14070
BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605
_RS14075
BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724
_RS14080
Position (kb)
2940
2941
2942 Strain fitness (log2 ratio)
-1
0
1 at 2940.146 kb on - strand, within BWI76_RS14065 at 2940.253 kb on + strand, within BWI76_RS14065 at 2940.261 kb on - strand, within BWI76_RS14065 at 2940.760 kb on - strand, within BWI76_RS14070 at 2941.102 kb on + strand, within BWI76_RS14075 at 2941.246 kb on - strand, within BWI76_RS14075 at 2941.809 kb on + strand at 2942.107 kb on + strand, within BWI76_RS14080 at 2942.131 kb on + strand, within BWI76_RS14080 at 2942.308 kb on + strand, within BWI76_RS14080
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 2,940,146 - BWI76_RS14065 0.43 -1.0 2,940,253 + BWI76_RS14065 0.69 +0.7 2,940,261 - BWI76_RS14065 0.70 -1.0 2,940,760 - BWI76_RS14070 0.66 +0.9 2,941,102 + BWI76_RS14075 0.21 -0.6 2,941,246 - BWI76_RS14075 0.43 -1.5 2,941,809 + -0.1 2,942,107 + BWI76_RS14080 0.16 +0.0 2,942,131 + BWI76_RS14080 0.17 -0.1 2,942,308 + BWI76_RS14080 0.22 -0.2
Or see this region's nucleotide sequence