Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02730 and BWI76_RS02735 are separated by 191 nucleotides BWI76_RS02735 and BWI76_RS02740 overlap by 11 nucleotides BWI76_RS02740 and BWI76_RS02745 are separated by 322 nucleotides BWI76_RS02745 and BWI76_RS02750 are separated by 67 nucleotides
BWI76_RS02730: BWI76_RS02730 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 552,455 to 554,398
_RS02730
BWI76_RS02735: BWI76_RS02735 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 554,590 to 555,333
_RS02735
BWI76_RS02740: BWI76_RS02740 - putative transcriptional regulator, at 555,323 to 555,880
_RS02740
BWI76_RS02745: BWI76_RS02745 - hypothetical protein, at 556,203 to 556,409
_RS02745
BWI76_RS02750: BWI76_RS02750 - DNA-binding transcriptional regulator AraC, at 556,477 to 557,349
_RS02750
Position (kb) 555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.380 kb on - strand at 554.390 kb on - strand at 554.431 kb on + strand at 554.567 kb on + strand at 554.567 kb on + strand at 554.736 kb on - strand, within BWI76_RS02735 at 554.803 kb on - strand, within BWI76_RS02735 at 554.963 kb on - strand, within BWI76_RS02735 at 555.079 kb on - strand, within BWI76_RS02735 at 555.173 kb on - strand, within BWI76_RS02735 at 555.207 kb on - strand, within BWI76_RS02735 at 555.478 kb on - strand, within BWI76_RS02740 at 555.568 kb on + strand, within BWI76_RS02740 at 555.634 kb on - strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.763 kb on + strand, within BWI76_RS02740 at 555.775 kb on + strand, within BWI76_RS02740 at 555.798 kb on - strand, within BWI76_RS02740 at 555.874 kb on + strand at 555.882 kb on - strand at 555.883 kb on - strand at 556.228 kb on - strand, within BWI76_RS02745 at 556.434 kb on + strand at 556.574 kb on + strand, within BWI76_RS02750 at 556.790 kb on + strand, within BWI76_RS02750 at 556.844 kb on - strand, within BWI76_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 554,380 - -1.4 554,390 - -0.5 554,431 + -0.1 554,567 + +0.1 554,567 + +0.3 554,736 - BWI76_RS02735 0.20 -2.8 554,803 - BWI76_RS02735 0.29 -3.5 554,963 - BWI76_RS02735 0.50 -1.1 555,079 - BWI76_RS02735 0.66 -3.6 555,173 - BWI76_RS02735 0.78 -2.7 555,207 - BWI76_RS02735 0.83 -0.8 555,478 - BWI76_RS02740 0.28 +0.4 555,568 + BWI76_RS02740 0.44 +0.3 555,634 - BWI76_RS02740 0.56 -0.4 555,683 + BWI76_RS02740 0.65 +0.1 555,683 + BWI76_RS02740 0.65 -0.3 555,763 + BWI76_RS02740 0.79 +0.5 555,775 + BWI76_RS02740 0.81 -0.6 555,798 - BWI76_RS02740 0.85 -0.4 555,874 + -0.2 555,882 - +1.8 555,883 - +0.4 556,228 - BWI76_RS02745 0.12 -0.3 556,434 + -0.3 556,574 + BWI76_RS02750 0.11 +0.1 556,790 + BWI76_RS02750 0.36 -0.1 556,844 - BWI76_RS02750 0.42 +0.0
Or see this region's nucleotide sequence