Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33885

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,192,562	+				+1.1
3,192,665	+				-1.2
3,192,667	+				-3.6
3,192,668	-				-2.7
3,192,842	-		BPHYT_RS33880	0.15	+0.1
3,192,929	+		BPHYT_RS33880	0.27	+0.0
3,192,930	-		BPHYT_RS33880	0.27	+0.9
3,193,010	-		BPHYT_RS33880	0.38	+0.7
3,193,013	+		BPHYT_RS33880	0.38	-2.4
3,193,013	+		BPHYT_RS33880	0.38	-1.0
3,193,013	+		BPHYT_RS33880	0.38	-2.3
3,193,014	-		BPHYT_RS33880	0.38	-1.8
3,193,026	+		BPHYT_RS33880	0.40	-0.4
3,193,289	-		BPHYT_RS33880	0.76	-1.1
3,193,472	-				-1.7
3,193,525	-		BPHYT_RS33885	0.10	-2.2
3,193,542	+		BPHYT_RS33885	0.12	+1.5
3,193,542	+		BPHYT_RS33885	0.12	-1.3
3,193,543	-		BPHYT_RS33885	0.12	-1.0
3,193,641	+		BPHYT_RS33885	0.24	-2.6
3,193,642	-		BPHYT_RS33885	0.25	-1.6
3,193,642	-		BPHYT_RS33885	0.25	-2.3
3,193,743	+		BPHYT_RS33885	0.37	-2.0
3,193,744	-		BPHYT_RS33885	0.37	-2.9
3,193,859	-		BPHYT_RS33885	0.51	-1.9
3,193,859	-		BPHYT_RS33885	0.51	-1.3
3,193,859	-		BPHYT_RS33885	0.51	-1.7
3,193,859	-		BPHYT_RS33885	0.51	-0.8
3,193,911	+		BPHYT_RS33885	0.58	-1.6
3,193,911	+		BPHYT_RS33885	0.58	-2.9
3,193,911	+		BPHYT_RS33885	0.58	-1.6
3,193,911	+		BPHYT_RS33885	0.58	-0.3
3,193,920	+		BPHYT_RS33885	0.59	-1.3
3,193,920	+		BPHYT_RS33885	0.59	+0.6
3,193,920	+		BPHYT_RS33885	0.59	-1.8
3,193,920	+		BPHYT_RS33885	0.59	-1.9
3,193,920	+		BPHYT_RS33885	0.59	-1.6
3,193,921	-		BPHYT_RS33885	0.59	-2.6
3,193,921	-		BPHYT_RS33885	0.59	-2.6
3,193,923	+		BPHYT_RS33885	0.59	-1.0
3,193,923	+		BPHYT_RS33885	0.59	-1.3
3,193,924	-		BPHYT_RS33885	0.59	-2.2
3,193,927	-		BPHYT_RS33885	0.60	-0.8
3,193,927	-		BPHYT_RS33885	0.60	-1.6
3,193,927	-		BPHYT_RS33885	0.60	-0.4
3,193,927	-		BPHYT_RS33885	0.60	+0.7
3,193,927	-		BPHYT_RS33885	0.60	-2.8
3,194,226	+				+1.1
3,194,227	-				-1.5
3,194,237	+				-1.7
3,194,237	+				-2.5
3,194,238	-				-1.6
3,194,372	+				-0.4
3,194,373	-				+0.1
3,194,394	+				-1.3
3,194,878	-				+1.1
3,194,878	-				-0.3