Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31675

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31670 and BPHYT_RS31675 are separated by 298 nucleotidesBPHYT_RS31675 and BPHYT_RS31680 are separated by 129 nucleotides BPHYT_RS31670: BPHYT_RS31670 - transposase, at 2,661,861 to 2,662,196 _RS31670 BPHYT_RS31675: BPHYT_RS31675 - hypothetical protein, at 2,662,495 to 2,662,821 _RS31675 BPHYT_RS31680: BPHYT_RS31680 - dehydrogenase, at 2,662,951 to 2,663,844 _RS31680 Position (kb) 2662 2663Strain fitness (log2 ratio) -1 0 1 2 3at 2661.914 kb on + strand, within BPHYT_RS31670at 2662.153 kb on - strand, within BPHYT_RS31670at 2662.227 kb on - strandat 2662.554 kb on + strand, within BPHYT_RS31675at 2662.696 kb on - strand, within BPHYT_RS31675at 2662.923 kb on - strandat 2662.938 kb on - strandat 2662.940 kb on + strandat 2662.944 kb on + strandat 2663.263 kb on - strand, within BPHYT_RS31680at 2663.354 kb on + strand, within BPHYT_RS31680at 2663.378 kb on + strand, within BPHYT_RS31680at 2663.527 kb on - strand, within BPHYT_RS31680at 2663.647 kb on - strand, within BPHYT_RS31680

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,661,914 + BPHYT_RS31670 0.16 -0.5
2,662,153 - BPHYT_RS31670 0.87 +0.8
2,662,227 - +0.4
2,662,554 + BPHYT_RS31675 0.18 +0.4
2,662,696 - BPHYT_RS31675 0.61 +0.9
2,662,923 - -1.0
2,662,938 - +0.1
2,662,940 + -0.8
2,662,944 + +1.1
2,663,263 - BPHYT_RS31680 0.35 +1.2
2,663,354 + BPHYT_RS31680 0.45 +0.1
2,663,378 + BPHYT_RS31680 0.48 -0.1
2,663,527 - BPHYT_RS31680 0.64 +3.2
2,663,647 - BPHYT_RS31680 0.78 -1.4

Or see this region's nucleotide sequence