Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29930

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
2,266,336	+		BPHYT_RS29925	0.60	-2.0
2,266,336	+		BPHYT_RS29925	0.60	+0.6
2,266,337	-		BPHYT_RS29925	0.61	-0.3
2,266,338	+		BPHYT_RS29925	0.61	-0.6
2,266,338	+		BPHYT_RS29925	0.61	+0.1
2,266,363	+		BPHYT_RS29925	0.62	-0.2
2,266,492	+		BPHYT_RS29925	0.72	-0.9
2,266,492	+		BPHYT_RS29925	0.72	-0.5
2,266,494	+		BPHYT_RS29925	0.72	-1.8
2,266,664	-		BPHYT_RS29925	0.85	+0.9
2,266,690	+		BPHYT_RS29925	0.87	+0.7
2,266,786	+				+1.6
2,266,960	+				-0.7
2,267,010	-				-0.4
2,267,010	-				+1.6
2,267,014	-				-1.4
2,267,027	-				+0.8
2,267,052	-				-0.4
2,267,113	-				+0.1
2,267,113	-				+0.1
2,267,143	+				+1.6
2,267,151	+				-1.2
2,267,188	+				-0.0
2,267,342	-				-0.7
2,267,588	+		BPHYT_RS29930	0.27	+0.2
2,267,588	+		BPHYT_RS29930	0.27	+0.4
2,267,588	+		BPHYT_RS29930	0.27	+0.4
2,267,588	+		BPHYT_RS29930	0.27	-4.9
2,267,589	-		BPHYT_RS29930	0.27	-0.3
2,267,613	-		BPHYT_RS29930	0.28	+2.5
2,267,657	+		BPHYT_RS29930	0.32	-0.4
2,267,658	-		BPHYT_RS29930	0.32	-0.0
2,267,658	-		BPHYT_RS29930	0.32	-0.8
2,267,847	-		BPHYT_RS29930	0.45	-0.1
2,267,968	+		BPHYT_RS29930	0.54	+1.7
2,268,237	-		BPHYT_RS29930	0.73	-0.3
2,268,237	-		BPHYT_RS29930	0.73	+0.4
2,268,239	+		BPHYT_RS29930	0.73	+0.5
2,268,239	+		BPHYT_RS29930	0.73	-0.2
2,268,239	+		BPHYT_RS29930	0.73	+0.2
2,268,240	-		BPHYT_RS29930	0.73	+0.7
2,268,240	-		BPHYT_RS29930	0.73	-1.0
2,268,293	+		BPHYT_RS29930	0.77	-0.1
2,268,315	-		BPHYT_RS29930	0.78	+0.5
2,268,315	-		BPHYT_RS29930	0.78	+2.1
2,268,446	+		BPHYT_RS29930	0.88	+0.0
2,268,531	+				-1.5
2,268,684	+		BPHYT_RS29935	0.45	+1.3
2,268,684	+		BPHYT_RS29935	0.45	+0.0
2,268,684	+		BPHYT_RS29935	0.45	-0.5
2,268,685	-		BPHYT_RS29935	0.46	-0.4
2,268,685	-		BPHYT_RS29935	0.46	-0.6
2,268,685	-		BPHYT_RS29935	0.46	+0.2
2,268,720	-		BPHYT_RS29935	0.74	-0.4
2,268,874	-				-0.1
2,269,341	+		BPHYT_RS29940	0.17	-0.3
2,269,461	-		BPHYT_RS29940	0.21	-0.1
2,269,461	-		BPHYT_RS29940	0.21	+3.2