Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28215

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28210 and BPHYT_RS28215 overlap by 4 nucleotidesBPHYT_RS28215 and BPHYT_RS28220 are separated by 17 nucleotidesBPHYT_RS28220 and BPHYT_RS28225 are separated by 67 nucleotides BPHYT_RS28210: BPHYT_RS28210 - ATPase, at 1,887,061 to 1,888,119 _RS28210 BPHYT_RS28215: BPHYT_RS28215 - D-ribose transporter ATP binding protein, at 1,888,116 to 1,889,645 _RS28215 BPHYT_RS28220: BPHYT_RS28220 - amidohydrolase, at 1,889,663 to 1,890,556 _RS28220 BPHYT_RS28225: BPHYT_RS28225 - L-rhamnose mutarotase, at 1,890,624 to 1,890,947 _RS28225 Position (kb) 1888 1889 1890Strain fitness (log2 ratio) -1 0 1at 1888.199 kb on + strandat 1888.381 kb on - strand, within BPHYT_RS28215at 1888.617 kb on - strand, within BPHYT_RS28215at 1889.665 kb on - strandat 1889.745 kb on + strandat 1890.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,888,199 + +0.5
1,888,381 - BPHYT_RS28215 0.17 -0.1
1,888,617 - BPHYT_RS28215 0.33 +0.3
1,889,665 - +0.0
1,889,745 + +1.0
1,890,582 - -0.5

Or see this region's nucleotide sequence