Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28195

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28190 and BPHYT_RS28195 are separated by 243 nucleotidesBPHYT_RS28195 and BPHYT_RS28200 are separated by 101 nucleotides BPHYT_RS28190: BPHYT_RS28190 - porin, at 1,883,195 to 1,884,280 _RS28190 BPHYT_RS28195: BPHYT_RS28195 - hypothetical protein, at 1,884,524 to 1,884,850 _RS28195 BPHYT_RS28200: BPHYT_RS28200 - sugar ABC transporter substrate-binding protein, at 1,884,952 to 1,885,959 _RS28200 Position (kb) 1884 1885Strain fitness (log2 ratio) -2 -1 0 1at 1883.894 kb on + strand, within BPHYT_RS28190at 1883.925 kb on - strand, within BPHYT_RS28190at 1885.251 kb on + strand, within BPHYT_RS28200at 1885.719 kb on - strand, within BPHYT_RS28200

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,883,894 + BPHYT_RS28190 0.64 +0.8
1,883,925 - BPHYT_RS28190 0.67 +0.2
1,885,251 + BPHYT_RS28200 0.30 -1.8
1,885,719 - BPHYT_RS28200 0.76 -1.2

Or see this region's nucleotide sequence