Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27845

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27840 and BPHYT_RS27845 are separated by 29 nucleotidesBPHYT_RS27845 and BPHYT_RS27850 are separated by 58 nucleotides BPHYT_RS27840: BPHYT_RS27840 - GTP-binding protein, at 1,807,734 to 1,808,990 _RS27840 BPHYT_RS27845: BPHYT_RS27845 - beta-lactamase, at 1,809,020 to 1,811,341 _RS27845 BPHYT_RS27850: BPHYT_RS27850 - hemerythrin, at 1,811,400 to 1,811,972 _RS27850 Position (kb) 1809 1810 1811 1812Strain fitness (log2 ratio) -1 0 1 2at 1808.045 kb on - strand, within BPHYT_RS27840at 1808.045 kb on - strand, within BPHYT_RS27840at 1808.090 kb on + strand, within BPHYT_RS27840at 1808.472 kb on + strand, within BPHYT_RS27840at 1808.620 kb on - strand, within BPHYT_RS27840at 1808.705 kb on - strand, within BPHYT_RS27840at 1808.705 kb on - strand, within BPHYT_RS27840at 1809.157 kb on - strandat 1809.321 kb on + strand, within BPHYT_RS27845at 1809.322 kb on - strand, within BPHYT_RS27845at 1809.525 kb on - strand, within BPHYT_RS27845at 1809.589 kb on + strand, within BPHYT_RS27845at 1811.822 kb on - strand, within BPHYT_RS27850at 1812.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,808,045 - BPHYT_RS27840 0.25 +1.0
1,808,045 - BPHYT_RS27840 0.25 -0.3
1,808,090 + BPHYT_RS27840 0.28 -0.0
1,808,472 + BPHYT_RS27840 0.59 +0.3
1,808,620 - BPHYT_RS27840 0.70 +0.5
1,808,705 - BPHYT_RS27840 0.77 +0.5
1,808,705 - BPHYT_RS27840 0.77 -0.2
1,809,157 - +0.0
1,809,321 + BPHYT_RS27845 0.13 -0.3
1,809,322 - BPHYT_RS27845 0.13 +1.8
1,809,525 - BPHYT_RS27845 0.22 +0.5
1,809,589 + BPHYT_RS27845 0.25 +0.2
1,811,822 - BPHYT_RS27850 0.74 -0.3
1,812,156 + -0.4

Or see this region's nucleotide sequence