Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27060

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27050 and BPHYT_RS27055 are separated by 90 nucleotidesBPHYT_RS27055 and BPHYT_RS27060 are separated by 347 nucleotidesBPHYT_RS27060 and BPHYT_RS27065 are separated by 162 nucleotidesBPHYT_RS27065 and BPHYT_RS27070 are separated by 91 nucleotides BPHYT_RS27050: BPHYT_RS27050 - DNA topoisomerase, at 1,643,363 to 1,644,682 _RS27050 BPHYT_RS27055: BPHYT_RS27055 - hypothetical protein, at 1,644,773 to 1,645,066 _RS27055 BPHYT_RS27060: BPHYT_RS27060 - photosystem reaction center subunit H, at 1,645,414 to 1,645,911 _RS27060 BPHYT_RS27065: BPHYT_RS27065 - hypothetical protein, at 1,646,074 to 1,646,463 _RS27065 BPHYT_RS27070: BPHYT_RS27070 - cation transporter, at 1,646,555 to 1,647,874 _RS27070 Position (kb) 1645 1646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1644.787 kb on + strandat 1645.082 kb on + strandat 1645.142 kb on + strandat 1645.142 kb on + strandat 1645.792 kb on + strand, within BPHYT_RS27060at 1645.795 kb on + strand, within BPHYT_RS27060at 1645.796 kb on - strand, within BPHYT_RS27060at 1646.367 kb on + strand, within BPHYT_RS27065at 1646.603 kb on - strandat 1646.740 kb on + strand, within BPHYT_RS27070at 1646.741 kb on - strand, within BPHYT_RS27070

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,644,787 + +0.4
1,645,082 + -4.4
1,645,142 + +1.6
1,645,142 + -1.3
1,645,792 + BPHYT_RS27060 0.76 -1.8
1,645,795 + BPHYT_RS27060 0.77 -0.8
1,645,796 - BPHYT_RS27060 0.77 -3.8
1,646,367 + BPHYT_RS27065 0.75 -0.8
1,646,603 - +0.7
1,646,740 + BPHYT_RS27070 0.14 +0.4
1,646,741 - BPHYT_RS27070 0.14 +0.3

Or see this region's nucleotide sequence