Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26415

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26405 and BPHYT_RS26410 are separated by 82 nucleotidesBPHYT_RS26410 and BPHYT_RS26415 are separated by 155 nucleotidesBPHYT_RS26415 and BPHYT_RS26420 are separated by 109 nucleotides BPHYT_RS26405: BPHYT_RS26405 - glycogen synthase, at 1,496,994 to 1,498,583 _RS26405 BPHYT_RS26410: BPHYT_RS26410 - hypothetical protein, at 1,498,666 to 1,499,055 _RS26410 BPHYT_RS26415: BPHYT_RS26415 - glutathione S-transferase, at 1,499,211 to 1,499,873 _RS26415 BPHYT_RS26420: BPHYT_RS26420 - phytochelatin synthase, at 1,499,983 to 1,500,837 _RS26420 Position (kb) 1499 1500Strain fitness (log2 ratio) -2 -1 0 1at 1498.243 kb on - strand, within BPHYT_RS26405at 1498.428 kb on + strandat 1498.628 kb on + strandat 1498.629 kb on - strandat 1498.713 kb on + strand, within BPHYT_RS26410at 1498.730 kb on - strand, within BPHYT_RS26410at 1498.732 kb on - strand, within BPHYT_RS26410at 1499.173 kb on - strandat 1499.232 kb on + strandat 1499.241 kb on + strandat 1499.523 kb on + strand, within BPHYT_RS26415at 1499.679 kb on + strand, within BPHYT_RS26415at 1499.788 kb on - strand, within BPHYT_RS26415at 1500.060 kb on - strandat 1500.096 kb on + strand, within BPHYT_RS26420at 1500.504 kb on - strand, within BPHYT_RS26420

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,498,243 - BPHYT_RS26405 0.79 -0.0
1,498,428 + +1.5
1,498,628 + +0.5
1,498,629 - +0.3
1,498,713 + BPHYT_RS26410 0.12 -0.0
1,498,730 - BPHYT_RS26410 0.16 +1.3
1,498,732 - BPHYT_RS26410 0.17 +0.7
1,499,173 - -0.8
1,499,232 + -0.3
1,499,241 + -1.4
1,499,523 + BPHYT_RS26415 0.47 -1.1
1,499,679 + BPHYT_RS26415 0.71 -2.4
1,499,788 - BPHYT_RS26415 0.87 -1.4
1,500,060 - +0.3
1,500,096 + BPHYT_RS26420 0.13 +0.7
1,500,504 - BPHYT_RS26420 0.61 -0.0

Or see this region's nucleotide sequence