Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26365

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26350 and BPHYT_RS26355 are separated by 51 nucleotidesBPHYT_RS26355 and BPHYT_RS26360 are separated by 199 nucleotidesBPHYT_RS26360 and BPHYT_RS26365 are separated by 160 nucleotidesBPHYT_RS26365 and BPHYT_RS26370 are separated by 130 nucleotides BPHYT_RS26350: BPHYT_RS26350 - hypothetical protein, at 1,485,013 to 1,485,249 _RS26350 BPHYT_RS26355: BPHYT_RS26355 - hypothetical protein, at 1,485,301 to 1,485,546 _RS26355 BPHYT_RS26360: BPHYT_RS26360 - hypothetical protein, at 1,485,746 to 1,485,943 _RS26360 BPHYT_RS26365: BPHYT_RS26365 - oxidoreductase molybdopterin subunit, at 1,486,104 to 1,488,470 _RS26365 BPHYT_RS26370: BPHYT_RS26370 - porin, at 1,488,601 to 1,489,686 _RS26370 Position (kb) 1486 1487 1488 1489Strain fitness (log2 ratio) -3 -2 -1 0 1at 1485.248 kb on - strandat 1485.467 kb on + strand, within BPHYT_RS26355at 1485.492 kb on - strand, within BPHYT_RS26355at 1486.653 kb on + strand, within BPHYT_RS26365at 1486.654 kb on - strand, within BPHYT_RS26365at 1486.990 kb on - strand, within BPHYT_RS26365at 1487.120 kb on + strand, within BPHYT_RS26365at 1487.120 kb on + strand, within BPHYT_RS26365at 1487.483 kb on + strand, within BPHYT_RS26365at 1487.484 kb on - strand, within BPHYT_RS26365at 1487.932 kb on - strand, within BPHYT_RS26365at 1488.348 kb on + strandat 1488.789 kb on - strand, within BPHYT_RS26370at 1488.851 kb on + strand, within BPHYT_RS26370at 1488.894 kb on - strand, within BPHYT_RS26370at 1488.894 kb on - strand, within BPHYT_RS26370at 1488.959 kb on + strand, within BPHYT_RS26370at 1488.980 kb on - strand, within BPHYT_RS26370at 1489.112 kb on + strand, within BPHYT_RS26370

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,485,248 - -1.4
1,485,467 + BPHYT_RS26355 0.67 +1.4
1,485,492 - BPHYT_RS26355 0.78 -1.4
1,486,653 + BPHYT_RS26365 0.23 -0.4
1,486,654 - BPHYT_RS26365 0.23 -0.2
1,486,990 - BPHYT_RS26365 0.37 -3.1
1,487,120 + BPHYT_RS26365 0.43 -0.5
1,487,120 + BPHYT_RS26365 0.43 -0.8
1,487,483 + BPHYT_RS26365 0.58 +0.5
1,487,484 - BPHYT_RS26365 0.58 +0.4
1,487,932 - BPHYT_RS26365 0.77 +0.5
1,488,348 + +1.2
1,488,789 - BPHYT_RS26370 0.17 -1.9
1,488,851 + BPHYT_RS26370 0.23 -0.6
1,488,894 - BPHYT_RS26370 0.27 +0.3
1,488,894 - BPHYT_RS26370 0.27 -0.0
1,488,959 + BPHYT_RS26370 0.33 -0.6
1,488,980 - BPHYT_RS26370 0.35 -0.8
1,489,112 + BPHYT_RS26370 0.47 -0.2

Or see this region's nucleotide sequence