Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25640 and BPHYT_RS25645 are separated by 91 nucleotides BPHYT_RS25645 and BPHYT_RS25650 overlap by 4 nucleotides BPHYT_RS25650 and BPHYT_RS25655 are separated by 111 nucleotides BPHYT_RS25655 and BPHYT_RS25660 are separated by 2 nucleotides
BPHYT_RS25640: BPHYT_RS25640 - MFS transporter, at 1,324,884 to 1,326,218
_RS25640
BPHYT_RS25645: BPHYT_RS25645 - dehydrogenase, at 1,326,310 to 1,327,203
_RS25645
BPHYT_RS25650: BPHYT_RS25650 - dihydroxy-acid dehydratase, at 1,327,200 to 1,328,966
_RS25650
BPHYT_RS25655: BPHYT_RS25655 - short-chain dehydrogenase, at 1,329,078 to 1,329,878
_RS25655
BPHYT_RS25660: BPHYT_RS25660 - MFS transporter, at 1,329,881 to 1,331,239
_RS25660
Position (kb) 1327
1328
1329 Strain fitness (log2 ratio) -1
0
1
2 at 1326.244 kb on + strand at 1326.245 kb on - strand at 1326.246 kb on + strand at 1326.433 kb on - strand, within BPHYT_RS25645 at 1327.003 kb on + strand, within BPHYT_RS25645 at 1327.422 kb on - strand, within BPHYT_RS25650 at 1328.205 kb on - strand, within BPHYT_RS25650 at 1328.621 kb on - strand, within BPHYT_RS25650 at 1328.625 kb on - strand, within BPHYT_RS25650 at 1329.505 kb on + strand, within BPHYT_RS25655
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 1,326,244 + +0.1 1,326,245 - +1.6 1,326,246 + +0.4 1,326,433 - BPHYT_RS25645 0.14 +0.5 1,327,003 + BPHYT_RS25645 0.78 -0.6 1,327,422 - BPHYT_RS25650 0.13 +0.7 1,328,205 - BPHYT_RS25650 0.57 -0.0 1,328,621 - BPHYT_RS25650 0.80 +2.5 1,328,625 - BPHYT_RS25650 0.81 +0.4 1,329,505 + BPHYT_RS25655 0.53 -1.0
Or see this region's nucleotide sequence