Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23450

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23445 and BPHYT_RS23450 are separated by 216 nucleotidesBPHYT_RS23450 and BPHYT_RS23455 are separated by 131 nucleotides BPHYT_RS23445: BPHYT_RS23445 - hexuronate transporter, at 827,844 to 829,136 _RS23445 BPHYT_RS23450: BPHYT_RS23450 - GntR family transcriptional regulator, at 829,353 to 830,066 _RS23450 BPHYT_RS23455: BPHYT_RS23455 - phosphorylase, at 830,198 to 831,106 _RS23455 Position (kb) 829 830 831Strain fitness (log2 ratio) -1 0 1 2at 828.564 kb on + strand, within BPHYT_RS23445at 828.564 kb on + strand, within BPHYT_RS23445at 829.135 kb on - strandat 829.157 kb on + strandat 830.195 kb on + strandat 830.785 kb on + strand, within BPHYT_RS23455

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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828,564 + BPHYT_RS23445 0.56 +1.1
828,564 + BPHYT_RS23445 0.56 +1.2
829,135 - +2.5
829,157 + +0.5
830,195 + +1.7
830,785 + BPHYT_RS23455 0.65 +0.5

Or see this region's nucleotide sequence