Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22990

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22985 and BPHYT_RS22990 are separated by 47 nucleotidesBPHYT_RS22990 and BPHYT_RS22995 are separated by 51 nucleotides BPHYT_RS22985: BPHYT_RS22985 - hypothetical protein, at 716,598 to 717,713 _RS22985 BPHYT_RS22990: BPHYT_RS22990 - nucleobase:cation symporter, at 717,761 to 719,089 _RS22990 BPHYT_RS22995: BPHYT_RS22995 - porin, at 719,141 to 720,247 _RS22995 Position (kb) 717 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 717.060 kb on + strand, within BPHYT_RS22985at 717.291 kb on - strand, within BPHYT_RS22985at 717.475 kb on - strand, within BPHYT_RS22985at 717.518 kb on + strand, within BPHYT_RS22985at 717.519 kb on - strand, within BPHYT_RS22985at 717.589 kb on - strand, within BPHYT_RS22985at 718.785 kb on - strand, within BPHYT_RS22990at 718.899 kb on - strand, within BPHYT_RS22990at 718.899 kb on - strand, within BPHYT_RS22990at 719.238 kb on - strandat 719.265 kb on - strand, within BPHYT_RS22995at 719.294 kb on + strand, within BPHYT_RS22995at 719.550 kb on + strand, within BPHYT_RS22995at 719.551 kb on - strand, within BPHYT_RS22995at 719.551 kb on - strand, within BPHYT_RS22995at 719.741 kb on + strand, within BPHYT_RS22995at 719.741 kb on + strand, within BPHYT_RS22995at 719.850 kb on + strand, within BPHYT_RS22995

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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717,060 + BPHYT_RS22985 0.41 +0.1
717,291 - BPHYT_RS22985 0.62 +2.0
717,475 - BPHYT_RS22985 0.79 +1.4
717,518 + BPHYT_RS22985 0.82 +0.6
717,519 - BPHYT_RS22985 0.83 -0.1
717,589 - BPHYT_RS22985 0.89 -0.1
718,785 - BPHYT_RS22990 0.77 -1.8
718,899 - BPHYT_RS22990 0.86 -0.6
718,899 - BPHYT_RS22990 0.86 -0.1
719,238 - +0.7
719,265 - BPHYT_RS22995 0.11 -0.3
719,294 + BPHYT_RS22995 0.14 -0.1
719,550 + BPHYT_RS22995 0.37 +0.5
719,551 - BPHYT_RS22995 0.37 +1.9
719,551 - BPHYT_RS22995 0.37 +0.3
719,741 + BPHYT_RS22995 0.54 +1.9
719,741 + BPHYT_RS22995 0.54 -0.3
719,850 + BPHYT_RS22995 0.64 +1.3

Or see this region's nucleotide sequence