Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22235 and BPHYT_RS22240 are separated by 256 nucleotides BPHYT_RS22240 and BPHYT_RS22245 overlap by 4 nucleotides BPHYT_RS22245 and BPHYT_RS22250 are separated by 74 nucleotides
BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658
_RS22235
BPHYT_RS22240: BPHYT_RS22240 - hypothetical protein, at 547,915 to 548,112
_RS22240
BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) <small>(from data)</small>, at 548,109 to 549,590
_RS22245
BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909
_RS22250
Position (kb) 548
549
550 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 547.112 kb on - strand, within BPHYT_RS22235 at 547.217 kb on - strand, within BPHYT_RS22235 at 547.217 kb on - strand, within BPHYT_RS22235 at 547.523 kb on + strand at 547.524 kb on - strand at 547.525 kb on + strand at 547.526 kb on - strand at 547.687 kb on - strand at 547.690 kb on - strand at 547.692 kb on + strand at 547.693 kb on - strand at 547.710 kb on - strand at 547.745 kb on + strand at 547.746 kb on - strand at 547.814 kb on - strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.817 kb on - strand at 547.972 kb on + strand, within BPHYT_RS22240 at 547.975 kb on - strand, within BPHYT_RS22240 at 547.975 kb on - strand, within BPHYT_RS22240 at 548.042 kb on - strand, within BPHYT_RS22240 at 548.086 kb on + strand, within BPHYT_RS22240 at 548.087 kb on - strand, within BPHYT_RS22240 at 548.298 kb on + strand, within BPHYT_RS22245 at 548.307 kb on + strand, within BPHYT_RS22245 at 548.338 kb on - strand, within BPHYT_RS22245 at 548.538 kb on + strand, within BPHYT_RS22245 at 548.539 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.701 kb on - strand, within BPHYT_RS22245 at 548.781 kb on + strand, within BPHYT_RS22245 at 548.782 kb on - strand, within BPHYT_RS22245 at 548.892 kb on - strand, within BPHYT_RS22245 at 549.367 kb on - strand, within BPHYT_RS22245 at 549.501 kb on + strand at 549.501 kb on + strand at 549.502 kb on - strand at 549.502 kb on - strand at 549.857 kb on - strand, within BPHYT_RS22250 at 550.087 kb on - strand, within BPHYT_RS22250
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 547,112 - BPHYT_RS22235 0.61 -1.8 547,217 - BPHYT_RS22235 0.69 -0.8 547,217 - BPHYT_RS22235 0.69 -0.9 547,523 + -1.6 547,524 - -1.9 547,525 + -0.9 547,526 - -4.1 547,687 - -1.0 547,690 - -1.3 547,692 + +0.3 547,693 - -3.7 547,710 - -1.6 547,745 + -1.4 547,746 - +0.2 547,814 - -3.1 547,816 + -2.1 547,816 + -1.8 547,816 + -0.9 547,816 + -2.8 547,817 - -1.1 547,972 + BPHYT_RS22240 0.29 -0.4 547,975 - BPHYT_RS22240 0.30 -1.2 547,975 - BPHYT_RS22240 0.30 -1.5 548,042 - BPHYT_RS22240 0.64 +1.3 548,086 + BPHYT_RS22240 0.86 -1.9 548,087 - BPHYT_RS22240 0.87 -0.8 548,298 + BPHYT_RS22245 0.13 -1.2 548,307 + BPHYT_RS22245 0.13 -1.9 548,338 - BPHYT_RS22245 0.15 -0.5 548,538 + BPHYT_RS22245 0.29 +1.2 548,539 - BPHYT_RS22245 0.29 -0.5 548,644 - BPHYT_RS22245 0.36 -1.8 548,644 - BPHYT_RS22245 0.36 -2.4 548,644 - BPHYT_RS22245 0.36 -0.9 548,700 + BPHYT_RS22245 0.40 -1.3 548,700 + BPHYT_RS22245 0.40 -0.8 548,700 + BPHYT_RS22245 0.40 -3.0 548,701 - BPHYT_RS22245 0.40 -1.4 548,781 + BPHYT_RS22245 0.45 -1.0 548,782 - BPHYT_RS22245 0.45 -1.1 548,892 - BPHYT_RS22245 0.53 -2.4 549,367 - BPHYT_RS22245 0.85 -1.2 549,501 + -0.3 549,501 + -0.7 549,502 - -1.4 549,502 - +0.4 549,857 - BPHYT_RS22250 0.15 +2.5 550,087 - BPHYT_RS22250 0.34 +0.3
Or see this region's nucleotide sequence