Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21970

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21960 and BPHYT_RS21965 are separated by 15 nucleotidesBPHYT_RS21965 and BPHYT_RS21970 overlap by 4 nucleotidesBPHYT_RS21970 and BPHYT_RS21975 are separated by 219 nucleotides BPHYT_RS21960: BPHYT_RS21960 - nucleoside transporter, at 483,861 to 485,138 _RS21960 BPHYT_RS21965: BPHYT_RS21965 - cytidine deaminase, at 485,154 to 485,543 _RS21965 BPHYT_RS21970: BPHYT_RS21970 - nucleoside hydrolase, at 485,540 to 486,505 _RS21970 BPHYT_RS21975: BPHYT_RS21975 - 2-dehydropantoate 2-reductase, at 486,725 to 487,660 _RS21975 Position (kb) 485 486 487Strain fitness (log2 ratio) -1 0 1 2at 484.593 kb on - strand, within BPHYT_RS21960at 484.866 kb on + strand, within BPHYT_RS21960at 485.015 kb on + strandat 485.535 kb on + strandat 485.536 kb on - strandat 485.540 kb on - strandat 485.822 kb on - strand, within BPHYT_RS21970at 486.266 kb on + strand, within BPHYT_RS21970at 486.267 kb on - strand, within BPHYT_RS21970at 486.342 kb on + strand, within BPHYT_RS21970at 486.636 kb on + strandat 486.736 kb on - strandat 486.738 kb on + strandat 487.046 kb on - strand, within BPHYT_RS21975at 487.132 kb on + strand, within BPHYT_RS21975

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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484,593 - BPHYT_RS21960 0.57 -0.7
484,866 + BPHYT_RS21960 0.79 +0.1
485,015 + +1.2
485,535 + -1.7
485,536 - -0.4
485,540 - +0.7
485,822 - BPHYT_RS21970 0.29 -0.7
486,266 + BPHYT_RS21970 0.75 +0.9
486,267 - BPHYT_RS21970 0.75 -0.4
486,342 + BPHYT_RS21970 0.83 +2.7
486,636 + -0.1
486,736 - -1.2
486,738 + -0.9
487,046 - BPHYT_RS21975 0.34 -0.1
487,132 + BPHYT_RS21975 0.43 +0.2

Or see this region's nucleotide sequence