Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21305

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21295 and BPHYT_RS21300 are separated by 45 nucleotidesBPHYT_RS21300 and BPHYT_RS21305 are separated by 139 nucleotidesBPHYT_RS21305 and BPHYT_RS21310 are separated by 165 nucleotides BPHYT_RS21295: BPHYT_RS21295 - AraC family transcriptional regulator, at 337,430 to 338,251 _RS21295 BPHYT_RS21300: BPHYT_RS21300 - membrane protein, at 338,297 to 338,812 _RS21300 BPHYT_RS21305: BPHYT_RS21305 - hypothetical protein, at 338,952 to 339,455 _RS21305 BPHYT_RS21310: BPHYT_RS21310 - porin, at 339,621 to 340,772 _RS21310 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 338.084 kb on + strand, within BPHYT_RS21295at 338.084 kb on + strand, within BPHYT_RS21295at 338.085 kb on - strand, within BPHYT_RS21295at 338.232 kb on - strandat 338.420 kb on - strand, within BPHYT_RS21300at 338.466 kb on - strand, within BPHYT_RS21300at 338.536 kb on - strand, within BPHYT_RS21300at 338.855 kb on + strandat 339.074 kb on - strand, within BPHYT_RS21305at 339.131 kb on + strand, within BPHYT_RS21305at 339.131 kb on + strand, within BPHYT_RS21305at 339.131 kb on + strand, within BPHYT_RS21305at 339.172 kb on + strand, within BPHYT_RS21305at 339.173 kb on - strand, within BPHYT_RS21305at 339.199 kb on + strand, within BPHYT_RS21305at 339.199 kb on + strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.200 kb on - strand, within BPHYT_RS21305at 339.201 kb on + strand, within BPHYT_RS21305at 339.371 kb on - strand, within BPHYT_RS21305at 339.467 kb on - strandat 339.525 kb on + strandat 339.606 kb on - strandat 339.623 kb on - strandat 339.742 kb on + strand, within BPHYT_RS21310at 339.742 kb on + strand, within BPHYT_RS21310at 339.743 kb on - strand, within BPHYT_RS21310at 339.757 kb on + strand, within BPHYT_RS21310at 339.758 kb on - strand, within BPHYT_RS21310at 339.758 kb on - strand, within BPHYT_RS21310at 339.758 kb on - strand, within BPHYT_RS21310at 339.758 kb on - strand, within BPHYT_RS21310at 339.784 kb on + strand, within BPHYT_RS21310at 339.865 kb on + strand, within BPHYT_RS21310at 339.865 kb on + strand, within BPHYT_RS21310at 339.865 kb on + strand, within BPHYT_RS21310at 339.919 kb on + strand, within BPHYT_RS21310at 339.920 kb on - strand, within BPHYT_RS21310at 340.010 kb on + strand, within BPHYT_RS21310at 340.010 kb on + strand, within BPHYT_RS21310at 340.010 kb on + strand, within BPHYT_RS21310at 340.011 kb on - strand, within BPHYT_RS21310at 340.039 kb on + strand, within BPHYT_RS21310at 340.040 kb on - strand, within BPHYT_RS21310at 340.045 kb on + strand, within BPHYT_RS21310at 340.046 kb on - strand, within BPHYT_RS21310at 340.046 kb on - strand, within BPHYT_RS21310at 340.046 kb on - strand, within BPHYT_RS21310at 340.063 kb on + strand, within BPHYT_RS21310at 340.192 kb on + strand, within BPHYT_RS21310at 340.255 kb on + strand, within BPHYT_RS21310at 340.255 kb on + strand, within BPHYT_RS21310at 340.282 kb on + strand, within BPHYT_RS21310at 340.283 kb on - strand, within BPHYT_RS21310at 340.297 kb on + strand, within BPHYT_RS21310at 340.298 kb on - strand, within BPHYT_RS21310at 340.298 kb on - strand, within BPHYT_RS21310at 340.298 kb on - strand, within BPHYT_RS21310at 340.409 kb on - strand, within BPHYT_RS21310at 340.427 kb on - strand, within BPHYT_RS21310at 340.454 kb on - strand, within BPHYT_RS21310at 340.454 kb on - strand, within BPHYT_RS21310

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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338,084 + BPHYT_RS21295 0.80 -0.1
338,084 + BPHYT_RS21295 0.80 -0.5
338,085 - BPHYT_RS21295 0.80 -0.3
338,232 - +0.2
338,420 - BPHYT_RS21300 0.24 +0.7
338,466 - BPHYT_RS21300 0.33 -0.5
338,536 - BPHYT_RS21300 0.46 +0.3
338,855 + -0.6
339,074 - BPHYT_RS21305 0.24 -0.5
339,131 + BPHYT_RS21305 0.36 +0.4
339,131 + BPHYT_RS21305 0.36 -1.5
339,131 + BPHYT_RS21305 0.36 +0.3
339,172 + BPHYT_RS21305 0.44 +0.6
339,173 - BPHYT_RS21305 0.44 -1.5
339,199 + BPHYT_RS21305 0.49 -0.0
339,199 + BPHYT_RS21305 0.49 +0.5
339,200 - BPHYT_RS21305 0.49 +0.1
339,200 - BPHYT_RS21305 0.49 +1.0
339,200 - BPHYT_RS21305 0.49 -0.3
339,200 - BPHYT_RS21305 0.49 -0.7
339,200 - BPHYT_RS21305 0.49 -1.7
339,200 - BPHYT_RS21305 0.49 +0.7
339,201 + BPHYT_RS21305 0.49 -0.2
339,371 - BPHYT_RS21305 0.83 -0.4
339,467 - +2.1
339,525 + +0.9
339,606 - -0.1
339,623 - -0.1
339,742 + BPHYT_RS21310 0.11 +0.1
339,742 + BPHYT_RS21310 0.11 +0.1
339,743 - BPHYT_RS21310 0.11 +0.2
339,757 + BPHYT_RS21310 0.12 +1.0
339,758 - BPHYT_RS21310 0.12 -0.5
339,758 - BPHYT_RS21310 0.12 -0.8
339,758 - BPHYT_RS21310 0.12 +0.5
339,758 - BPHYT_RS21310 0.12 +0.2
339,784 + BPHYT_RS21310 0.14 -2.5
339,865 + BPHYT_RS21310 0.21 -0.5
339,865 + BPHYT_RS21310 0.21 -0.9
339,865 + BPHYT_RS21310 0.21 -1.0
339,919 + BPHYT_RS21310 0.26 +0.5
339,920 - BPHYT_RS21310 0.26 +0.3
340,010 + BPHYT_RS21310 0.34 -0.4
340,010 + BPHYT_RS21310 0.34 +0.7
340,010 + BPHYT_RS21310 0.34 -0.3
340,011 - BPHYT_RS21310 0.34 +0.0
340,039 + BPHYT_RS21310 0.36 -3.3
340,040 - BPHYT_RS21310 0.36 -0.7
340,045 + BPHYT_RS21310 0.37 -2.1
340,046 - BPHYT_RS21310 0.37 +0.3
340,046 - BPHYT_RS21310 0.37 +0.0
340,046 - BPHYT_RS21310 0.37 -0.9
340,063 + BPHYT_RS21310 0.38 -0.3
340,192 + BPHYT_RS21310 0.50 -1.0
340,255 + BPHYT_RS21310 0.55 +3.1
340,255 + BPHYT_RS21310 0.55 -0.7
340,282 + BPHYT_RS21310 0.57 -0.0
340,283 - BPHYT_RS21310 0.57 +0.1
340,297 + BPHYT_RS21310 0.59 +1.1
340,298 - BPHYT_RS21310 0.59 +0.3
340,298 - BPHYT_RS21310 0.59 +0.2
340,298 - BPHYT_RS21310 0.59 +0.2
340,409 - BPHYT_RS21310 0.68 -0.1
340,427 - BPHYT_RS21310 0.70 -1.4
340,454 - BPHYT_RS21310 0.72 +0.7
340,454 - BPHYT_RS21310 0.72 -0.2

Or see this region's nucleotide sequence