Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18850

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
4,235,896	+		BPHYT_RS18845	0.64	-0.2
4,235,898	+		BPHYT_RS18845	0.64	-0.2
4,235,898	+		BPHYT_RS18845	0.64	+1.0
4,235,899	-		BPHYT_RS18845	0.64	-1.8
4,235,899	-		BPHYT_RS18845	0.64	+0.1
4,235,899	-		BPHYT_RS18845	0.64	+1.0
4,235,950	-		BPHYT_RS18845	0.66	-1.2
4,236,065	-		BPHYT_RS18845	0.72	-0.6
4,236,065	-		BPHYT_RS18845	0.72	+0.1
4,236,065	-		BPHYT_RS18845	0.72	-0.3
4,236,099	+		BPHYT_RS18845	0.74	+0.1
4,236,276	+		BPHYT_RS18845	0.83	-0.0
4,236,276	+		BPHYT_RS18845	0.83	+0.8
4,236,277	-		BPHYT_RS18845	0.83	+0.1
4,236,351	+		BPHYT_RS18845	0.87	-0.0
4,236,352	-		BPHYT_RS18845	0.87	-1.1
4,236,405	+		BPHYT_RS18845	0.89	+0.4
4,236,405	+		BPHYT_RS18845	0.89	+0.1
4,236,406	-		BPHYT_RS18845	0.89	-0.5
4,236,415	-		BPHYT_RS18845	0.90	+0.2
4,236,456	+				+0.1
4,236,456	+				+0.7
4,236,471	+				-2.6
4,236,472	-				-1.6
4,236,492	+				-0.8
4,236,493	-				-1.1
4,236,638	+				+0.0
4,236,639	-				+0.2
4,237,209	+		BPHYT_RS18850	0.42	-3.5
4,237,209	+		BPHYT_RS18850	0.42	-1.1
4,237,210	-		BPHYT_RS18850	0.42	-2.9
4,237,210	-		BPHYT_RS18850	0.42	-0.4
4,237,210	-		BPHYT_RS18850	0.42	-0.7
4,237,210	-		BPHYT_RS18850	0.42	-1.0
4,237,247	-		BPHYT_RS18850	0.47	-0.3
4,237,264	+		BPHYT_RS18850	0.49	-1.1
4,237,265	-		BPHYT_RS18850	0.49	-1.3
4,237,646	+				-0.8
4,237,647	-				-0.1
4,237,647	-				-1.2
4,237,650	-				-1.1
4,237,650	-				-0.4
4,237,650	-				-0.7
4,237,760	+				+0.1
4,237,760	+				+0.3
4,237,761	-				-0.4
4,237,761	-				-0.4
4,237,916	+				-1.1
4,237,917	-				-1.1
4,238,034	-				+0.1
4,238,148	-		BPHYT_RS18855	0.16	+1.9
4,238,169	-		BPHYT_RS18855	0.18	+1.0
4,238,223	-		BPHYT_RS18855	0.23	+1.2
4,238,223	-		BPHYT_RS18855	0.23	-0.1
4,238,223	-		BPHYT_RS18855	0.23	+0.0
4,238,422	-		BPHYT_RS18855	0.43	-4.4
4,238,496	-		BPHYT_RS18855	0.50	-3.7
4,238,653	+		BPHYT_RS18855	0.66	-0.5
4,238,654	-		BPHYT_RS18855	0.66	+1.0