Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16160

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16155 and BPHYT_RS16160 are separated by 426 nucleotidesBPHYT_RS16160 and BPHYT_RS16165 are separated by 168 nucleotides BPHYT_RS16155: BPHYT_RS16155 - carbohydrate kinase, at 3,663,901 to 3,665,382 _RS16155 BPHYT_RS16160: BPHYT_RS16160 - purine permease, at 3,665,809 to 3,667,218 _RS16160 BPHYT_RS16165: BPHYT_RS16165 - multidrug transporter, at 3,667,387 to 3,668,964 _RS16165 Position (kb) 3665 3666 3667 3668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3665.225 kb on - strand, within BPHYT_RS16155at 3665.289 kb on - strandat 3665.339 kb on - strandat 3665.414 kb on - strandat 3665.443 kb on + strandat 3665.549 kb on + strandat 3665.566 kb on - strandat 3665.566 kb on - strandat 3665.704 kb on - strandat 3665.704 kb on - strandat 3665.704 kb on - strandat 3665.704 kb on - strandat 3665.808 kb on + strandat 3665.808 kb on + strandat 3665.809 kb on - strandat 3665.809 kb on - strandat 3665.809 kb on - strandat 3665.896 kb on + strandat 3665.897 kb on - strandat 3665.897 kb on - strandat 3666.305 kb on - strand, within BPHYT_RS16160at 3666.319 kb on + strand, within BPHYT_RS16160at 3666.320 kb on - strand, within BPHYT_RS16160at 3666.393 kb on + strand, within BPHYT_RS16160at 3666.687 kb on + strand, within BPHYT_RS16160at 3666.709 kb on - strand, within BPHYT_RS16160at 3667.104 kb on - strandat 3667.192 kb on - strandat 3667.224 kb on - strandat 3667.235 kb on - strandat 3667.327 kb on + strandat 3667.328 kb on - strandat 3667.374 kb on + strandat 3667.375 kb on - strandat 3667.375 kb on - strandat 3667.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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3,665,225 - BPHYT_RS16155 0.89 -2.4
3,665,289 - -0.1
3,665,339 - -0.4
3,665,414 - -0.7
3,665,443 + -0.9
3,665,549 + -2.0
3,665,566 - +0.4
3,665,566 - +0.1
3,665,704 - -0.1
3,665,704 - -0.1
3,665,704 - -0.1
3,665,704 - +0.4
3,665,808 + +3.1
3,665,808 + -2.0
3,665,809 - -0.1
3,665,809 - +0.5
3,665,809 - -0.4
3,665,896 + +0.1
3,665,897 - -0.7
3,665,897 - +0.6
3,666,305 - BPHYT_RS16160 0.35 +0.5
3,666,319 + BPHYT_RS16160 0.36 +0.7
3,666,320 - BPHYT_RS16160 0.36 -3.6
3,666,393 + BPHYT_RS16160 0.41 +0.5
3,666,687 + BPHYT_RS16160 0.62 +1.1
3,666,709 - BPHYT_RS16160 0.64 +0.3
3,667,104 - +0.2
3,667,192 - +0.5
3,667,224 - -0.3
3,667,235 - -1.4
3,667,327 + +0.1
3,667,328 - +0.9
3,667,374 + -1.8
3,667,375 - +0.1
3,667,375 - -0.2
3,667,437 - +0.0

Or see this region's nucleotide sequence