Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15715

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15710 and BPHYT_RS15715 overlap by 4 nucleotidesBPHYT_RS15715 and BPHYT_RS15720 are separated by 548 nucleotidesBPHYT_RS15720 and BPHYT_RS15725 are separated by 197 nucleotides BPHYT_RS15710: BPHYT_RS15710 - ATP-dependent Clp protease ATP-binding protein, at 3,564,877 to 3,567,174 _RS15710 BPHYT_RS15715: BPHYT_RS15715 - ATP-dependent Clp protease adapter protein ClpS, at 3,567,171 to 3,567,485 _RS15715 BPHYT_RS15720: BPHYT_RS15720 - cold-shock protein, at 3,568,034 to 3,568,240 _RS15720 BPHYT_RS15725: BPHYT_RS15725 - hypothetical protein, at 3,568,438 to 3,569,232 _RS15725 Position (kb) 3567 3568Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3566.473 kb on - strand, within BPHYT_RS15710at 3566.808 kb on - strand, within BPHYT_RS15710at 3567.266 kb on - strand, within BPHYT_RS15715at 3567.310 kb on - strand, within BPHYT_RS15715at 3567.310 kb on - strand, within BPHYT_RS15715at 3567.310 kb on - strand, within BPHYT_RS15715at 3567.344 kb on - strand, within BPHYT_RS15715at 3567.409 kb on + strand, within BPHYT_RS15715at 3567.410 kb on - strand, within BPHYT_RS15715at 3567.410 kb on - strand, within BPHYT_RS15715at 3567.410 kb on - strand, within BPHYT_RS15715at 3567.410 kb on - strand, within BPHYT_RS15715at 3567.410 kb on - strand, within BPHYT_RS15715at 3567.477 kb on - strandat 3567.486 kb on - strandat 3567.486 kb on - strandat 3567.486 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.497 kb on - strandat 3567.628 kb on - strandat 3567.674 kb on - strandat 3567.759 kb on - strandat 3567.798 kb on + strandat 3567.799 kb on - strandat 3567.799 kb on - strandat 3567.878 kb on - strandat 3567.878 kb on - strandat 3568.019 kb on - strandat 3568.019 kb on - strandat 3568.019 kb on - strandat 3568.046 kb on - strandat 3568.241 kb on + strandat 3568.304 kb on + strandat 3568.304 kb on + strandat 3568.304 kb on + strandat 3568.305 kb on - strandat 3568.305 kb on - strandat 3568.308 kb on + strandat 3568.308 kb on + strandat 3568.339 kb on - strandat 3568.439 kb on + strandat 3568.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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3,566,473 - BPHYT_RS15710 0.69 +1.9
3,566,808 - BPHYT_RS15710 0.84 -0.4
3,567,266 - BPHYT_RS15715 0.30 -0.4
3,567,310 - BPHYT_RS15715 0.44 -0.1
3,567,310 - BPHYT_RS15715 0.44 -0.7
3,567,310 - BPHYT_RS15715 0.44 -1.6
3,567,344 - BPHYT_RS15715 0.55 -0.8
3,567,409 + BPHYT_RS15715 0.76 -0.9
3,567,410 - BPHYT_RS15715 0.76 -1.4
3,567,410 - BPHYT_RS15715 0.76 -1.1
3,567,410 - BPHYT_RS15715 0.76 -1.7
3,567,410 - BPHYT_RS15715 0.76 -1.6
3,567,410 - BPHYT_RS15715 0.76 -3.2
3,567,477 - +1.1
3,567,486 - -3.5
3,567,486 - -1.7
3,567,486 - -4.1
3,567,497 - -1.1
3,567,497 - -1.3
3,567,497 - -1.4
3,567,497 - -1.4
3,567,497 - -1.3
3,567,497 - -1.3
3,567,497 - -0.4
3,567,628 - -0.9
3,567,674 - +0.0
3,567,759 - -0.4
3,567,798 + -1.5
3,567,799 - -1.0
3,567,799 - -0.5
3,567,878 - -0.4
3,567,878 - +0.2
3,568,019 - +1.0
3,568,019 - +1.8
3,568,019 - +1.2
3,568,046 - +3.1
3,568,241 + +3.6
3,568,304 + -0.5
3,568,304 + -0.0
3,568,304 + -1.0
3,568,305 - +0.3
3,568,305 - +0.4
3,568,308 + -0.2
3,568,308 + +0.1
3,568,339 - -0.1
3,568,439 + +0.3
3,568,439 + -0.0

Or see this region's nucleotide sequence