Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15570

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,531,778	+		BPHYT_RS15560	0.54	+0.6
3,531,794	+		BPHYT_RS15560	0.57	-1.9
3,531,794	+		BPHYT_RS15560	0.57	-0.7
3,531,794	+		BPHYT_RS15560	0.57	-0.6
3,531,794	+		BPHYT_RS15560	0.57	+0.9
3,531,794	+		BPHYT_RS15560	0.57	+1.1
3,531,795	-		BPHYT_RS15560	0.57	-3.4
3,531,795	-		BPHYT_RS15560	0.57	+0.8
3,531,797	-		BPHYT_RS15560	0.57	-0.3
3,531,947	+		BPHYT_RS15560	0.78	-0.1
3,531,947	+		BPHYT_RS15560	0.78	-0.6
3,531,947	+		BPHYT_RS15560	0.78	-0.3
3,531,947	+		BPHYT_RS15560	0.78	+2.1
3,531,948	-		BPHYT_RS15560	0.78	-0.5
3,531,948	-		BPHYT_RS15560	0.78	+0.9
3,532,212	+				+1.1
3,532,213	-				+0.5
3,532,224	+				-0.2
3,532,224	+				+0.2
3,532,226	+				-0.7
3,532,245	+				-0.4
3,532,378	+		BPHYT_RS15565	0.57	-0.4
3,532,457	-				+0.6
3,532,592	-				-0.1
3,532,686	+				-0.7
3,532,700	-				+0.4
3,532,821	-		BPHYT_RS15570	0.20	+0.9
3,532,861	+		BPHYT_RS15570	0.24	-0.4
3,532,862	-		BPHYT_RS15570	0.24	-0.6
3,532,862	-		BPHYT_RS15570	0.24	+1.2
3,533,009	+		BPHYT_RS15570	0.38	-0.2
3,533,009	+		BPHYT_RS15570	0.38	+0.7
3,533,010	-		BPHYT_RS15570	0.38	-0.4
3,533,010	-		BPHYT_RS15570	0.38	+0.1
3,533,175	+		BPHYT_RS15570	0.55	+1.1
3,533,185	+		BPHYT_RS15570	0.56	+0.2
3,533,241	+		BPHYT_RS15570	0.61	+0.4
3,533,242	-		BPHYT_RS15570	0.61	+0.2
3,533,242	-		BPHYT_RS15570	0.61	-0.1
3,533,242	-		BPHYT_RS15570	0.61	+1.9
3,533,596	+				-2.1
3,533,602	+				-2.0
3,533,603	-				-1.7
3,533,603	-				+0.9
3,533,654	+				+0.3
3,533,655	-				-0.1
3,533,758	+				+2.3
3,533,758	+				+0.9
3,533,759	-				-1.7
3,533,759	-				+1.8
3,533,759	-				+1.2
3,533,796	+				+1.2
3,534,143	+		BPHYT_RS15575	0.38	+4.8
3,534,197	+		BPHYT_RS15575	0.43	+1.6
3,534,289	+		BPHYT_RS15575	0.52	+1.9
3,534,491	+		BPHYT_RS15575	0.72	+3.3
3,534,491	+		BPHYT_RS15575	0.72	+0.0
3,534,492	-		BPHYT_RS15575	0.72	+1.1