Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14650

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14645 and BPHYT_RS14650 are separated by 351 nucleotidesBPHYT_RS14650 and BPHYT_RS14655 are separated by 264 nucleotides BPHYT_RS14645: BPHYT_RS14645 - hypothetical protein, at 3,337,200 to 3,337,700 _RS14645 BPHYT_RS14650: BPHYT_RS14650 - thymidylate synthase, at 3,338,052 to 3,339,023 _RS14650 BPHYT_RS14655: BPHYT_RS14655 - Fis family transcriptional regulator, at 3,339,288 to 3,340,682 _RS14655 Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -1 0 1 2 3at 3337.126 kb on + strandat 3337.652 kb on + strandat 3337.653 kb on - strandat 3337.653 kb on - strandat 3337.978 kb on - strandat 3339.144 kb on + strandat 3339.145 kb on - strandat 3339.289 kb on + strandat 3339.289 kb on + strandat 3339.290 kb on - strandat 3339.350 kb on + strandat 3339.461 kb on + strand, within BPHYT_RS14655at 3339.626 kb on - strand, within BPHYT_RS14655at 3339.630 kb on - strand, within BPHYT_RS14655at 3339.630 kb on - strand, within BPHYT_RS14655at 3339.785 kb on - strand, within BPHYT_RS14655at 3339.828 kb on - strand, within BPHYT_RS14655

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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3,337,126 + -0.2
3,337,652 + +0.2
3,337,653 - -0.2
3,337,653 - -0.3
3,337,978 - -0.4
3,339,144 + -1.5
3,339,145 - +0.5
3,339,289 + +1.1
3,339,289 + -1.1
3,339,290 - -1.6
3,339,350 + -0.5
3,339,461 + BPHYT_RS14655 0.12 +0.4
3,339,626 - BPHYT_RS14655 0.24 -1.1
3,339,630 - BPHYT_RS14655 0.25 -0.1
3,339,630 - BPHYT_RS14655 0.25 +0.6
3,339,785 - BPHYT_RS14655 0.36 -1.0
3,339,828 - BPHYT_RS14655 0.39 +3.1

Or see this region's nucleotide sequence