Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11550

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11545 and BPHYT_RS11550 are separated by 76 nucleotidesBPHYT_RS11550 and BPHYT_RS11555 overlap by 4 nucleotides BPHYT_RS11545: BPHYT_RS11545 - allantoicase, at 2,624,807 to 2,625,820 _RS11545 BPHYT_RS11550: BPHYT_RS11550 - OHCU decarboxylase, at 2,625,897 to 2,626,418 _RS11550 BPHYT_RS11555: BPHYT_RS11555 - allantoinase, at 2,626,415 to 2,627,365 _RS11555 Position (kb) 2625 2626 2627Strain fitness (log2 ratio) -3 -2 -1 0 1at 2625.315 kb on + strand, within BPHYT_RS11545at 2625.316 kb on - strand, within BPHYT_RS11545at 2625.316 kb on - strand, within BPHYT_RS11545at 2625.349 kb on - strand, within BPHYT_RS11545at 2625.373 kb on - strand, within BPHYT_RS11545at 2625.655 kb on - strand, within BPHYT_RS11545at 2625.898 kb on + strandat 2626.623 kb on + strand, within BPHYT_RS11555at 2626.872 kb on + strand, within BPHYT_RS11555at 2627.134 kb on - strand, within BPHYT_RS11555at 2627.140 kb on - strand, within BPHYT_RS11555at 2627.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,625,315 + BPHYT_RS11545 0.50 -2.2
2,625,316 - BPHYT_RS11545 0.50 -2.0
2,625,316 - BPHYT_RS11545 0.50 -1.5
2,625,349 - BPHYT_RS11545 0.53 -0.9
2,625,373 - BPHYT_RS11545 0.56 -1.2
2,625,655 - BPHYT_RS11545 0.84 -2.4
2,625,898 + -0.1
2,626,623 + BPHYT_RS11555 0.22 +1.2
2,626,872 + BPHYT_RS11555 0.48 -1.7
2,627,134 - BPHYT_RS11555 0.76 -2.8
2,627,140 - BPHYT_RS11555 0.76 -0.5
2,627,346 + -0.0

Or see this region's nucleotide sequence