Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10250

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10245 and BPHYT_RS10250 are separated by 85 nucleotidesBPHYT_RS10250 and BPHYT_RS10255 are separated by 148 nucleotides BPHYT_RS10245: BPHYT_RS10245 - import inner membrane translocase subunit Tim44, at 2,329,668 to 2,330,630 _RS10245 BPHYT_RS10250: BPHYT_RS10250 - inosine-5-monophosphate dehydrogenase, at 2,330,716 to 2,331,207 _RS10250 BPHYT_RS10255: BPHYT_RS10255 - LysR family transcriptional regulator, at 2,331,356 to 2,332,252 _RS10255 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -1 0 1at 2329.835 kb on + strand, within BPHYT_RS10245at 2329.835 kb on + strand, within BPHYT_RS10245at 2330.698 kb on + strandat 2330.789 kb on + strand, within BPHYT_RS10250at 2330.789 kb on + strand, within BPHYT_RS10250at 2330.789 kb on + strand, within BPHYT_RS10250at 2330.790 kb on - strand, within BPHYT_RS10250at 2330.790 kb on - strand, within BPHYT_RS10250at 2330.998 kb on - strand, within BPHYT_RS10250at 2331.314 kb on - strandat 2331.378 kb on - strandat 2331.434 kb on - strandat 2331.568 kb on - strand, within BPHYT_RS10255at 2332.108 kb on - strand, within BPHYT_RS10255

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,329,835 + BPHYT_RS10245 0.17 +0.7
2,329,835 + BPHYT_RS10245 0.17 +0.5
2,330,698 + -0.6
2,330,789 + BPHYT_RS10250 0.15 +0.2
2,330,789 + BPHYT_RS10250 0.15 -0.1
2,330,789 + BPHYT_RS10250 0.15 -0.7
2,330,790 - BPHYT_RS10250 0.15 +0.3
2,330,790 - BPHYT_RS10250 0.15 +0.2
2,330,998 - BPHYT_RS10250 0.57 +0.6
2,331,314 - -0.5
2,331,378 - +0.8
2,331,434 - +0.6
2,331,568 - BPHYT_RS10255 0.24 -0.0
2,332,108 - BPHYT_RS10255 0.84 -0.0

Or see this region's nucleotide sequence