Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09305

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09295 and BPHYT_RS09300 are separated by 46 nucleotidesBPHYT_RS09300 and BPHYT_RS09305 are separated by 87 nucleotidesBPHYT_RS09305 and BPHYT_RS09310 are separated by 159 nucleotides BPHYT_RS09295: BPHYT_RS09295 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,108,328 to 2,109,044 _RS09295 BPHYT_RS09300: BPHYT_RS09300 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 2,109,091 to 2,109,570 _RS09300 BPHYT_RS09305: BPHYT_RS09305 - alkyl hydroperoxide reductase, at 2,109,658 to 2,110,206 _RS09305 BPHYT_RS09310: BPHYT_RS09310 - sensor histidine kinase, at 2,110,366 to 2,111,715 _RS09310 Position (kb) 2109 2110 2111Strain fitness (log2 ratio) -1 0 1at 2109.893 kb on + strand, within BPHYT_RS09305at 2110.067 kb on + strand, within BPHYT_RS09305at 2110.068 kb on - strand, within BPHYT_RS09305at 2110.068 kb on - strand, within BPHYT_RS09305at 2110.188 kb on + strandat 2110.276 kb on + strandat 2110.276 kb on + strandat 2110.276 kb on + strandat 2110.277 kb on - strandat 2110.277 kb on - strandat 2110.529 kb on + strand, within BPHYT_RS09310at 2110.529 kb on + strand, within BPHYT_RS09310at 2110.530 kb on - strand, within BPHYT_RS09310at 2110.667 kb on + strand, within BPHYT_RS09310

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,109,893 + BPHYT_RS09305 0.43 -1.1
2,110,067 + BPHYT_RS09305 0.74 -0.4
2,110,068 - BPHYT_RS09305 0.75 -1.2
2,110,068 - BPHYT_RS09305 0.75 +0.6
2,110,188 + +0.2
2,110,276 + -0.3
2,110,276 + -0.0
2,110,276 + -0.9
2,110,277 - -0.8
2,110,277 - +0.5
2,110,529 + BPHYT_RS09310 0.12 +0.3
2,110,529 + BPHYT_RS09310 0.12 +0.0
2,110,530 - BPHYT_RS09310 0.12 +0.2
2,110,667 + BPHYT_RS09310 0.22 +0.3

Or see this region's nucleotide sequence