Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08110

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08105 and BPHYT_RS08110 are separated by 386 nucleotidesBPHYT_RS08110 and BPHYT_RS08115 are separated by 144 nucleotides BPHYT_RS08105: BPHYT_RS08105 - GTP-binding protein, at 1,849,848 to 1,851,674 _RS08105 BPHYT_RS08110: BPHYT_RS08110 - 2-oxoglutarate dehydrogenase E1, at 1,852,061 to 1,854,922 _RS08110 BPHYT_RS08115: BPHYT_RS08115 - dihydrolipoamide succinyltransferase, at 1,855,067 to 1,856,353 _RS08115 Position (kb) 1852 1853 1854 1855Strain fitness (log2 ratio) -1 0 1 2at 1851.672 kb on + strandat 1851.676 kb on + strandat 1851.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,851,672 + -0.3
1,851,676 + -0.7
1,851,923 + +2.0

Or see this region's nucleotide sequence