Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07440

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07430 and BPHYT_RS07435 are separated by 105 nucleotidesBPHYT_RS07435 and BPHYT_RS07440 are separated by 97 nucleotidesBPHYT_RS07440 and BPHYT_RS07445 are separated by 191 nucleotides BPHYT_RS07430: BPHYT_RS07430 - LuxR family transcriptional regulator, at 1,688,873 to 1,690,348 _RS07430 BPHYT_RS07435: BPHYT_RS07435 - amino acid transporter, at 1,690,454 to 1,691,071 _RS07435 BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062 _RS07440 BPHYT_RS07445: BPHYT_RS07445 - carbonate dehydratase, at 1,692,254 to 1,692,826 _RS07445 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -2 -1 0 1at 1690.680 kb on + strand, within BPHYT_RS07435at 1690.833 kb on + strand, within BPHYT_RS07435at 1691.766 kb on - strand, within BPHYT_RS07440at 1692.518 kb on + strand, within BPHYT_RS07445at 1692.875 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
1,690,680 + BPHYT_RS07435 0.37 +0.2
1,690,833 + BPHYT_RS07435 0.61 +0.1
1,691,766 - BPHYT_RS07440 0.67 -2.0
1,692,518 + BPHYT_RS07445 0.46 +0.7
1,692,875 + +1.4

Or see this region's nucleotide sequence